Tsin001659.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060961.1:54589205-54624635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.8 1.1e+03 2.6 0.3 3 19 399 415 398 419 0.73 2 16 0.87 3.4e+02 4.2 4.5 1 19 425 443 425 447 0.92 3 16 0.015 6.1 9.8 0.4 2 19 463 480 462 482 0.91 4 16 0.023 9.2 9.2 2.2 1 23 489 511 489 511 0.92 5 16 4.1e-06 0.0016 21.0 0.6 2 23 518 540 517 540 0.95 6 16 8e-05 0.032 16.9 1.1 1 23 546 568 546 568 0.98 7 16 0.00053 0.21 14.3 0.1 1 23 574 596 574 596 0.97 8 16 3e-05 0.012 18.3 3.0 1 23 602 624 602 624 0.95 9 16 3.9 1.5e+03 2.2 0.2 1 23 635 660 635 660 0.90 10 16 5.9e-07 0.00024 23.6 0.7 1 23 679 701 679 701 0.98 11 16 1e-05 0.0041 19.7 3.6 1 23 707 729 707 729 0.97 12 16 6.6e-07 0.00026 23.5 1.9 1 23 735 757 735 757 0.98 13 16 0.15 59 6.7 0.5 1 23 763 785 763 785 0.97 14 16 0.00027 0.11 15.3 2.9 1 20 791 810 791 813 0.94 15 16 8.2e-08 3.3e-05 26.3 0.2 1 23 819 841 819 841 0.98 16 16 1.9e-05 0.0077 18.9 2.3 1 23 847 869 847 869 0.96
Sequence Information
- Coding Sequence
- ATGGAGATCAAGTATGAAGAAATTGGGTCCCATGAGAGTGAAGATGAATCAGAGTGTGAAGATGAACAACTGGTTAGACTAACAGAACATCCTGGACAGCTCTGTCGTCTTTGTGCTTCATCCATATCAGAAGCAGTATATATATTCAGCTCAGTGGGCACAGAGCAACAAATAGCAGCAAAAATAAACACCTGTTTGCCTGTAACGaagcgggatttaacgatggaggctacattgctGAGCTTTTTAcacgagctgaaagcagagatgaagacggcaaacgacaacctcgctgccgagctgaaagagatgaagacggcaaacgacaacctcgctgccaaaatggaaacgtcaaacgacaacctcgctgccaaaatggaatcgtcaaacgacaacctcgctgccaaaatggaaacgtcaaacgataacctcgctgccaagctgaaagagatgaagacggagctatcggcgaaaattgacgtcaaactgactggcgtgacggaagacgtggaagaactcggcgaaaaggtggaagacctctgccagcatgtggacgtcgtggaggacgacggggaacgtcttggcgccctggtagtaagagttgacgagagtgtcaaagtactggatgccaggggcagacggaatagcgcggacccggggagggagcacctaatggccgaggcaACAGTTGTGCccatttcagataacgaaagtATTACTAACTCCATTATCATTGATGTTCACAGGGCAAGAGGAACCAAAGAAAAGAAGCCAACAGTTGAGTTGCTCTCAATCAAAACAGAGCAGGAAGGCTGTGCACTGGATAATGCTTATCAGACATGCAGCAATGAGAGCTTATTTTGCTGTCCTCTGTGTTGCAATGGGAGCATGGCAATCCAGAATGCTGCACTGGATATCAATGATGCTCTAGAGCTGGGCTTGCTAGGCCCCACTCAGCCAGGCTTGTATCAACGACCTGTTCTCAGTCCAGAAAAGCTAGAAGGACAATTGGTCCGATTACAGACTAACTTGAATGATACTGGTACTGCTGTATGGGAAGATATACCAGTTGTTAATGCAGAAGTGGCAACAATCACAGAGGATGGTACTACAGTGGAGGTTGCTGAAGGAATATACAATCTTCCAGTTGCAGATAATATGACGTTGCTTGATGGCGGGTCTAGCCTTCCAGCTTGTCGACTCTGTGGCCAGGTGTTTCCAAACATTGAACTTTGTTTGGACCATGCTAAGGCACACATGGAGTCAGACTTGTATCCATGTAGCTTGTGTGAGCTGTGTTTTACTAGCGAAATATGTCTCATCAGCCATTGTGAAGAGCATAAGGCAGCAGAAGCACAAGCGCGACCAAAGGCTACAAAGCGATTGGTGTGTGCCACTTGTGGCAGGCGATTTAACAACCCAAAGACTCTAGCTGGACATTCATGTTTCAGCATGGCACGACCTTACAAATGTTTGGACTGTGGAAAATTCTTTCAAACAGAAGCTAGACTAATGTTCCACCAGAAATTTCACTTAGGAGGGAACCCCGTAGAATGTGAGCATTGTGGAAAGGAGTTTACAAGAGAGAATAACTTATTTGATCATGTTCGGTTGGTGCATATGGGTGAGAAAGCCCATCGCTGTGATCAATGTGGAAAAACATTTCAGCTGAAGGCTCGCCTTGTAGCACATCTGCGGGTTCATTCTGGGGAACGTCCATTTGTTTGTGATATATGTGGTGGAAAATTCTATGACAATGCTACGCTGAAGGGCCACCGTGTAACACACCTGGATGTAAAACCTTTTCAGTGTGATAAATGTGGTCGTTGTTTTGCTCGCAAGACTTTATTCAAACAGCATGCACTTGCACATTCTTCAGAGGAGCCCAAAACACCAAAAGTTTATAACTGTAAACTCTGTAGTGATGGTGAAGTGTACACCTCATATGCCAGACTGCTAGATCACAGAAAACTAGTCCATCCTACCGTCAAGATATTTGATGAAGAGGAACAACCTGTTCATTCATCAAAACCATTTAAATGTGATGACTGTGGAAAGTCATTTGCATATAGAGTGACATTGTTAGCTCATAGACGAAACCATACTGGTGAACTCCCTTTTGCATGCGATTATTGTGAAAAGCGATTCTCCCAAAAACGATCACTGGTGCTACACCATCGTACCCACACTGGAGAAAAGCCATTTAAATGTGATGTTTGTGGAAAACGGTTTGTACAGAGTGCACATTTGTATTCACACTTGCGGTTACATACAGGAGAAAAACCCTATGCATGTGACTTTTGTGGGGATAAATTCAGGCTGAAAGATGTTAGAGATGCACATATGCGAAAGCACACAGGTGAAAGACCATTTAAATGCAATGTGTGCAGTAAGGCATTtcgtactagccattcttattaCCAGCATATGTGGATACATCAGGGCAAGAAACCTTACCCATGTGGGTACTGTGGTAAGGCATTCCGTCGATCGAATGGACTTAAGATTCATATCCGCATACATACAGGTGAGAAGCCACACTCATGTGATGTATGTGGACGAAGCTTTGCTCAGAAACAGGATATGAAAAAACATAGAAATCTACATATGTTTGGCAAACTTTAA
- Protein Sequence
- MEIKYEEIGSHESEDESECEDEQLVRLTEHPGQLCRLCASSISEAVYIFSSVGTEQQIAAKINTCLPVTKRDLTMEATLLSFLHELKAEMKTANDNLAAELKEMKTANDNLAAKMETSNDNLAAKMESSNDNLAAKMETSNDNLAAKLKEMKTELSAKIDVKLTGVTEDVEELGEKVEDLCQHVDVVEDDGERLGALVVRVDESVKVLDARGRRNSADPGREHLMAEATVVPISDNESITNSIIIDVHRARGTKEKKPTVELLSIKTEQEGCALDNAYQTCSNESLFCCPLCCNGSMAIQNAALDINDALELGLLGPTQPGLYQRPVLSPEKLEGQLVRLQTNLNDTGTAVWEDIPVVNAEVATITEDGTTVEVAEGIYNLPVADNMTLLDGGSSLPACRLCGQVFPNIELCLDHAKAHMESDLYPCSLCELCFTSEICLISHCEEHKAAEAQARPKATKRLVCATCGRRFNNPKTLAGHSCFSMARPYKCLDCGKFFQTEARLMFHQKFHLGGNPVECEHCGKEFTRENNLFDHVRLVHMGEKAHRCDQCGKTFQLKARLVAHLRVHSGERPFVCDICGGKFYDNATLKGHRVTHLDVKPFQCDKCGRCFARKTLFKQHALAHSSEEPKTPKVYNCKLCSDGEVYTSYARLLDHRKLVHPTVKIFDEEEQPVHSSKPFKCDDCGKSFAYRVTLLAHRRNHTGELPFACDYCEKRFSQKRSLVLHHRTHTGEKPFKCDVCGKRFVQSAHLYSHLRLHTGEKPYACDFCGDKFRLKDVRDAHMRKHTGERPFKCNVCSKAFRTSHSYYQHMWIHQGKKPYPCGYCGKAFRRSNGLKIHIRIHTGEKPHSCDVCGRSFAQKQDMKKHRNLHMFGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -