Tsin067868.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- lin-13
- Assembly
- GCA_030765045.1
- Location
- CM060970.1:10291074-10297493[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.00018 0.072 15.8 2.1 1 23 15 37 15 37 0.97 2 36 0.018 7.1 9.5 3.2 1 23 66 89 66 89 0.93 3 36 0.00014 0.055 16.2 1.9 2 23 96 118 95 118 0.97 4 36 0.0013 0.52 13.1 1.0 1 23 182 204 182 204 0.97 5 36 0.0086 3.4 10.5 0.1 1 23 312 334 312 334 0.96 6 36 0.12 47 7.0 3.1 1 23 351 374 351 374 0.93 7 36 0.0016 0.63 12.9 0.1 1 23 437 460 437 460 0.96 8 36 0.27 1.1e+02 5.9 1.1 1 23 501 523 501 523 0.97 9 36 0.0059 2.3 11.1 0.2 3 23 590 611 588 611 0.94 10 36 2.8 1.1e+03 2.7 1.9 1 23 633 656 633 656 0.94 11 36 0.56 2.2e+02 4.8 1.7 2 19 663 682 662 687 0.84 12 36 1.1 4.6e+02 3.9 0.0 2 23 696 718 696 718 0.91 13 36 0.11 44 7.0 0.3 2 23 725 747 724 747 0.91 14 36 8.5e-06 0.0034 20.0 2.8 1 23 755 777 755 777 0.97 15 36 1.8 7.3e+02 3.2 0.0 6 23 840 859 835 859 0.82 16 36 0.0007 0.28 14.0 1.9 1 23 862 885 862 885 0.97 17 36 0.00015 0.061 16.0 0.7 2 23 892 914 891 914 0.96 18 36 0.011 4.2 10.3 6.2 1 21 943 963 943 964 0.95 19 36 1.9e-05 0.0074 18.9 1.1 1 23 983 1006 983 1006 0.97 20 36 7.6 3e+03 1.3 0.9 3 23 1011 1033 1010 1033 0.86 21 36 3.7 1.5e+03 2.3 0.8 2 23 1071 1093 1071 1093 0.88 22 36 2.7 1.1e+03 2.7 0.2 2 23 1100 1122 1100 1122 0.95 23 36 1 4.1e+02 4.0 3.6 2 23 1131 1152 1130 1153 0.92 24 36 1.5 6e+02 3.5 0.1 3 23 1159 1180 1157 1180 0.94 25 36 0.18 71 6.4 0.1 3 23 1238 1259 1236 1259 0.85 26 36 5.5e-05 0.022 17.5 0.2 1 23 1288 1310 1288 1310 0.98 27 36 5.4e-05 0.022 17.5 2.4 1 23 1321 1345 1321 1345 0.91 28 36 2 8.1e+02 3.1 2.0 2 23 1453 1475 1452 1475 0.92 29 36 2.7 1.1e+03 2.7 0.8 2 23 1482 1504 1481 1504 0.94 30 36 2.5 9.8e+02 2.8 1.2 1 23 1515 1537 1515 1537 0.92 31 36 0.0018 0.72 12.7 4.7 1 23 1553 1575 1553 1576 0.95 32 36 0.043 17 8.3 2.0 1 23 1593 1615 1593 1615 0.97 33 36 8e-06 0.0032 20.1 2.0 1 23 1695 1717 1695 1717 0.99 34 36 6.1e-05 0.024 17.3 1.0 1 23 1750 1772 1750 1773 0.96 35 36 0.79 3.2e+02 4.4 0.0 1 23 1783 1806 1783 1806 0.94 36 36 0.0047 1.9 11.4 2.9 1 22 1810 1832 1810 1832 0.96
Sequence Information
- Coding Sequence
- ATGTTTTCTAGGTTTGAGGACGGCCAGGAAGAGGGCAGTTTGCACACATGCGGCATCTGTAGCAAGGCATTCTCCAGTAAGGGTCATCTTGCATTGCACAACAAGATACACAGCAAGGAGTCTGCATCTTTCAAGCCAGTACCAGATCCTGCCACTGCTGCTGGAACTGCCTGGAAGAGTGGTTACTATCGCCCGTACCAGTGTGACCTCTGCAACAAATCATATTCAACAGCTAAGCATCGTTGGGGCCATGTCAGTGTGTGTCATCGTGGTGATCCTCTGGTGACATGTCCAGTGTGTTCCAGAGTGTTTTCCACTTGCTATAACCTTGGAGAACATAAAAGGACAAAACATGGCATGGAGGATGAAAATGATATTCCGGAAGAAAGTGTATCAATTGTGAAAGCAAAGCCGCTATCTAGCACTAGACATATGTCACCAACGTCCTTCCCaagcaataacataataaaatcattatCACCCACTGCCAGTACACAAGAGGCCACACATATCTCTTTAGATGAAGTAAACACGGCAGTTCTGCACACTTGCGCACAGTGCCTCAAAGTTTTCAAAACAGAAGGTGAACTGGAACAGCATTCTCTCACACATTTACAGTCTTCTACAAAATGTTCATCCCCAGAACCCAGTCGAAAATCAGTTTCTAGTTTTACCAATGAAATGAGTTTACTGAAGCAAACACTGCTACAAAATCGTCCTAGTGTAGCCGAAGGAAAGAAGAGGCAATCCTCTGTGGAGGAAACTGACTGCTCTACAAACAAGAAAGCTGCAGTTGAAAATCCTTCTGAGGTAACTCCAACAGGTGGCAGCAGACGGAAGAATTCAAAGCCACGAAAGATAGAGCAGCGCAATGAAGATAATCCAAGAGACAATTTAGAACTAAGTAGTGAAGACTCTATGGCAAATCAAGGTTATgtgtgttctgtttgttcacaAATGTTTTCGTCTATTATTGAGCTACAAGAACATAGTATTATCCATGAAGAGGAAGCAGCTGCTACAACTTCAGAAAACTGTGTTGCCAAGCCTTTCTCTTGTCTGCTCTGTGAAAAGGATTTCTCACTCCGCACATCACTGAGTCGACATTTTAATGCATGCCATGGCATTGATCCTGCTGAAATTATGGATATCTCAAAATATCAACGTTCACCAAAGAAAACACTTCCCCGCGTCAAAGAGGAGGAACAGGTATCTGCTTTGGATGAATCAGATCTCTTTGATGTTGATGCAGAGGATGAAGGAAATGATACTAGAGGAACAGAAAACAAATTGCAACAAGGGGGCAGCTTTGCCTGTGAGGTTTGCAGCCGTGAATTCGGTGATCGTGCTTCGTTGTGGCTACACTTGCGTTACACACACAAAGAGTATGCTGCATATGCCTGTGGAGTTTGTTTACAGATTTGTGGAAACAATACGCACATGTATGAACATTGGACTACCCATCATCCTCCAGATCGGGCATCCACAGAACAAAGAAGGTACAGTTGCCAGATGTGTGGACGACAACATGATTCACGCAAGAAACTTTTAGCTCATGTTCTTGTCCACAACTTGGATGATGGTTCAGGTGGCACATATGATCCGGAACTGCTTGTCACTTTAAACACTGGCTTCTATAACTTTGATGGGCGAGATAACCGTGACAGTCCTGCACCAGTCAATGAACTTAATTCAACATTGGAAGCAGAATTTGGTTCTGCAGAATATAGTGGAGGAGAATACACTGGAAACCCAGCTTTGTTTGGCTGCGAGTTGTGTTACAAATCTTTTCCTACTGAAGATGGTCTTGTGAAACATAAAAAAGGAGCCCATCGGTTGGACCCTAGAGCAAGCTCTTCAACACAAAACAACTCCAAGGGCTCATATCAGTTGTATTTTGTTTGTGAGCTGTGTGGAAGCTCACACAGAAGCAAATCTGAGCGTTGGAGACACGTGTTCAGGACACACGGGGGAGAGCAAACACTAACTTGTGACAGACCAGGATGTGGAAAGGTGTTTCCAACAAGAGCTTTAAGGCAAGACCACTGCACCAACCATCATCGTCTTCAGGGAGCAACACCTAATGTCTGTGAGATATGTGGTAAACTTTGGGGTACTCGTGTGGACTTTTGGAAACACCTCATGGGTGTGCATCCAGACTGTGTTCCTTTGACCTGTGGTGTCTGCCTCAAGATCTTTTGTTCAGTTCCAGAACTTCAGAATCACGTCAGTGCAAACCATATGCCTCTAACAGGTGGCGACTTCTGCTGTGACATCTGTGGTCGTCCTTACTCCAACAGATCAAAGCTTTCGCGTCACCGCAGAATTCATTTGGTTGGCGAATCTGCAGATATTCCATGTTACCCAGAAATGCTGCTTGGCACTCCTGGTACAACTGCAAGACAACCTGCCTTTCCTACTTTAACACCAAAATTTGGCCAAAATACTCCAGGCGAGTTACAAGGACATAAAAGCAAGCACACATCTTCAGCATTACCACCCCTGTACTGTGATGCCTGTCCAGATGCAGTTTTTGCAAACATATTTAACCTAGCTGAACATCGCCGCACAATCCATGGCCTTTTTCCATGTGATCTTTGCTCTAAATTTTATGGTCGCACATCACATTTGTGGAAGCATGTCAAACGAGTACATAACAACCATCCTGAATTGACTTGCCCCATATGCAAGCGTATATCTGCAAGTAAATCCCATTTGGAAACTCACATTGCTACCAAACATCGATCTTTGGAATCAAAAACTTCCACATCTAAAACACAAGAACTAGAAGTTCCTGCACTGAAAGCACCAAGTATACCAACATTGTATCCTTGCCATAAGTGTTCTAGGCGATTCTATAAACGTCACCTACTGACAAAACATCAACTTCATTGTCCAGCAAGACATCATCGTGAGAAATCAAAGTCAGAAGATAGCATGACGGAATACCCATGTGATACTTGTGCAAAAGTGTTTTCTTCTCATTCTAAACTGCGAGATCATCAGCGAGTAATCCACGCTCCACAGCATTGTGAACTATGTTCCAACGTAACATATAATTCCAAAATAGATCTCATGCAGCACATTAAGGATTCTCATGCAGATGATCCTAATTTTTGTTGCTCTCATCCTGGATGCACTCGCACAATGAGATCGCGTGTAGATCGTGACCGTCATGTAGCAATGCATCGCTCATTCAAGTATCCACCTACATGTTCTCTTTGTGGCGAGAATTGTGCAAATCGTGTTAAGGCATGGAGTCATTACTCAGCTCGTCATAAATCTTCAATTTCaaatgtgtgtggtgtttgttaTGATCATTTCCCCTCCACCAGCGTTCTAGTGGAGCATGTACGTACACTTCATACAAGAGTTCTCAGAAATAAGGATACCTGCAAAATCTGTGTGAAAACATACTCCAGTTTTTATAAAGTTCTAATGCATCATGCAAATCATCACCCAGATTACCAAATCTGTCGTCAATGTCTTGAGGTATTTCCTGAAAAGCAGGAACTAGACAGTCATGTtgaaaaagaacatgcaacaaaagaggaagaagatgaagatgaggaggagcaggaggaggaagacAATGATGAGGAGGAAGAAGATAAGAAACCAAAGAACACTAGTGTTTCAGAGGGGGTTGTTGACGAACTTCCATTACCAGCAACTGTATTGATAAAGGAAGAGAAAAAAGATGAGATAGATTGCAGTCATTGTGGAGAAGAATTTGCCACAGAAGATGAACGTGACCAACATGTTGCACTGGCACATCCTACTGAAGATAATGCTGCCAAGCGCCAACATACTCCTGATCCCGGGGGCAATCCCAGTACTGTAAAGCGTCCTCGTCGTTCATATGATTGTGACAAGTGTCCTGAAATATTCCGCTCTCCATCAGATCTAGTGGAGCACAAGAAGCGACATCAAAAGACCCCAGTAGCTGAAGTTAAGCCCTATCATTGTAGTCAATGTGAGAAGTTTTTTACCAACAAATCATCTTATTGGAGGCATATTAACTCTCCAGCacaccatgcagcaaaattaCAGGTGCAACAGAAATTGGCTGATGAACATTCCACTCCAAGAAGTGAAAGTGCAGCAAATAAGAGTACTGCTATGGTGTACATCCCTGAATCCAACCTTAGGGAGACATTAATGAGAAGAGTGAAAATGGAGCTGGACATGCTGGACGATAGCGACCACGATAGCAAGAGCTTAACTGAGAGTGAAGTTGATAAGGATGCAAGCTTAGAGAGTGAAAGTGTCAAGGAGTTGCCAGTAACTTTAAAACCTGTTAGAAAGCGTCCAGAATCACGCAAAGTATACCGTGGAGGACCAGATGTGCCATGCCAATGTCAGTTGTGTGGTAAGCGATGGCCTGCAATGAAGCATTTGTGGCAGCATCTGATACGTAATCACCGTCATGAGGCTGCCGTAACATGCGGAGTTTGCCTAGAGGTCTGCCAAGACTATCGCAGTCTCTCTACACACTTAACCTCACAGCATCCCGATAACTTTAAAGGTGAAGGAAACAACTTCACTTGTCGTATCTGTGGACGTTATCATAATGCAAGATCAAAGCTTATTCAGCATGCTACCATTCATATTATTCTAGGCCCAGCTCCAGAACAGCAACCACAATCGAATGTTCATTCTTGCCGCTTCTGTTTCAAAGCTTTCACCAATGAGAGTAGCCTTCAAGAGCATGTTCAAATGCACCATTCGTCTGGGAGCATATCAAAGGCTGCGCGCCCTGCTGAACTATCACCACATACATGTGATGTATGCTTCAAAGTATGTGGCAATGAAGGAGCATTAGTAAGTCACAAGAAAAGTCACCAGAGGGGAACAACAGAATATCGCCGTCCAAAAGAAGAGGTAGATGTGGTAGAGACAGATGAGGATGAggacgacaatgacaatgaatCTACTACAGAACAAGGTAGCAAAGAAGAGAATGatgaagaggaagatgaagatgatgaggatgacgacgatgacgacgacgatgatgaagaGGATGAGGATGAAGAACAAAGTGAACAAAGAACCACTACCAGTGAACGCAAACAATTTTATAGATGTGATATGTGCCCACGCACTTTTAGAGATAAAGATGAATTCAAAGATCACACTAAGAGCCATCCTCAGATTGCTGACTTGCATCTGCAGATGAGGAGGAAAACACCTGTAGTGGCTATACCAGAGTTGCCAAAACAAGAAGTAGAGAAACAAACGTTTTATGTGTGTAGCGTTTGTAGTCAGGTGTTCAAAACACAGGCAGCACTTTCAGTGCATCAGACTAGACATCACCAACAAAGATCACTTAGTACTGGTAAATTCCCTTGTGCATCCTGCAGTGAGGGATTTCCTACCATTGCAGCACTCTCTGAGCATGTTAAAGCAAGTCATGCCAAAATGTTCACCTGCACCAGGTGTAACAAGAAGTCATTTTCTTCATATGTGAATCTCACCAAGCACTATCGCACTTGTCAACCACAGGCAGTGCATTCTCAAAATAAAAGTCAGCTGGAGAGCTCCACTAACTTGTCTGAAGATAGTCAGGATTCTTCTGGAGACGAAACTAACTGCGCCAAAAGCAGCAGACACACAACTCCTATGTATTCTAATACAAGTAATAACCAAAGTATTGCGGACCAAGGAGCCAAAAGGACAGAAGCCCAGAAAAGTTTGGATTTAGTGATGGGAATCCCAAATATTGGTTTGAGAAGATTAAGTAGTAGTTCTGATGATTCAGATGAGGAAAACATCACAGCACAGACTTCCACTATTAGCAATACTGAAAAGACTGCAGAAGTGGAATCTGTTGACAAATTGCCAGAAAAGAGCAGTCCTGACATTTCTGaccatgaaatcaaaatttcTAATGATAGTGTGGTATCCCTAGAAGCTAGGGAGGATTCTGCAAACGTGGCGCAGGAAGAATGTATAACAGTTGCTGATAGTGCTCGTAATAACCAAGAAGTTACAAAATCTGTGATTACGTTAAGTGATGATGAATCTCAAGCTTCTGTGAAATCTGTAAAACAGGATGACATATTCGTAGTATCATTGAGTGATGACTCAGAAATGTCCATCAAGGACTGTAAAGAAGACGCAGCAAGCGAAAATTGTGTAGTTCCAGAAGTAGTTAATAGTGAATCAAAGCCAGAACTGACAGCTCCACAAGAGCCTGAGCCCAAACCTGAACCTGAACCTGTTAGTGATAGGACTGAAAGTGATAGGGATGTAATAGACTTGGCAGCACATGATGCTGACAaacaaaatagtgaaagtgaattTCAAATAGCAACGGGGGATGAACCAAAAGTAGCAGGAACAAAGGGTAAAGACTGTTTGTTCTCTTTAGAAGATGCACTGGATAAGTTAGAAGCTGAGAATAGTGAAAAGTGA
- Protein Sequence
- MFSRFEDGQEEGSLHTCGICSKAFSSKGHLALHNKIHSKESASFKPVPDPATAAGTAWKSGYYRPYQCDLCNKSYSTAKHRWGHVSVCHRGDPLVTCPVCSRVFSTCYNLGEHKRTKHGMEDENDIPEESVSIVKAKPLSSTRHMSPTSFPSNNIIKSLSPTASTQEATHISLDEVNTAVLHTCAQCLKVFKTEGELEQHSLTHLQSSTKCSSPEPSRKSVSSFTNEMSLLKQTLLQNRPSVAEGKKRQSSVEETDCSTNKKAAVENPSEVTPTGGSRRKNSKPRKIEQRNEDNPRDNLELSSEDSMANQGYVCSVCSQMFSSIIELQEHSIIHEEEAAATTSENCVAKPFSCLLCEKDFSLRTSLSRHFNACHGIDPAEIMDISKYQRSPKKTLPRVKEEEQVSALDESDLFDVDAEDEGNDTRGTENKLQQGGSFACEVCSREFGDRASLWLHLRYTHKEYAAYACGVCLQICGNNTHMYEHWTTHHPPDRASTEQRRYSCQMCGRQHDSRKKLLAHVLVHNLDDGSGGTYDPELLVTLNTGFYNFDGRDNRDSPAPVNELNSTLEAEFGSAEYSGGEYTGNPALFGCELCYKSFPTEDGLVKHKKGAHRLDPRASSSTQNNSKGSYQLYFVCELCGSSHRSKSERWRHVFRTHGGEQTLTCDRPGCGKVFPTRALRQDHCTNHHRLQGATPNVCEICGKLWGTRVDFWKHLMGVHPDCVPLTCGVCLKIFCSVPELQNHVSANHMPLTGGDFCCDICGRPYSNRSKLSRHRRIHLVGESADIPCYPEMLLGTPGTTARQPAFPTLTPKFGQNTPGELQGHKSKHTSSALPPLYCDACPDAVFANIFNLAEHRRTIHGLFPCDLCSKFYGRTSHLWKHVKRVHNNHPELTCPICKRISASKSHLETHIATKHRSLESKTSTSKTQELEVPALKAPSIPTLYPCHKCSRRFYKRHLLTKHQLHCPARHHREKSKSEDSMTEYPCDTCAKVFSSHSKLRDHQRVIHAPQHCELCSNVTYNSKIDLMQHIKDSHADDPNFCCSHPGCTRTMRSRVDRDRHVAMHRSFKYPPTCSLCGENCANRVKAWSHYSARHKSSISNVCGVCYDHFPSTSVLVEHVRTLHTRVLRNKDTCKICVKTYSSFYKVLMHHANHHPDYQICRQCLEVFPEKQELDSHVEKEHATKEEEDEDEEEQEEEDNDEEEEDKKPKNTSVSEGVVDELPLPATVLIKEEKKDEIDCSHCGEEFATEDERDQHVALAHPTEDNAAKRQHTPDPGGNPSTVKRPRRSYDCDKCPEIFRSPSDLVEHKKRHQKTPVAEVKPYHCSQCEKFFTNKSSYWRHINSPAHHAAKLQVQQKLADEHSTPRSESAANKSTAMVYIPESNLRETLMRRVKMELDMLDDSDHDSKSLTESEVDKDASLESESVKELPVTLKPVRKRPESRKVYRGGPDVPCQCQLCGKRWPAMKHLWQHLIRNHRHEAAVTCGVCLEVCQDYRSLSTHLTSQHPDNFKGEGNNFTCRICGRYHNARSKLIQHATIHIILGPAPEQQPQSNVHSCRFCFKAFTNESSLQEHVQMHHSSGSISKAARPAELSPHTCDVCFKVCGNEGALVSHKKSHQRGTTEYRRPKEEVDVVETDEDEDDNDNESTTEQGSKEENDEEEDEDDEDDDDDDDDDEEDEDEEQSEQRTTTSERKQFYRCDMCPRTFRDKDEFKDHTKSHPQIADLHLQMRRKTPVVAIPELPKQEVEKQTFYVCSVCSQVFKTQAALSVHQTRHHQQRSLSTGKFPCASCSEGFPTIAALSEHVKASHAKMFTCTRCNKKSFSSYVNLTKHYRTCQPQAVHSQNKSQLESSTNLSEDSQDSSGDETNCAKSSRHTTPMYSNTSNNQSIADQGAKRTEAQKSLDLVMGIPNIGLRRLSSSSDDSDEENITAQTSTISNTEKTAEVESVDKLPEKSSPDISDHEIKISNDSVVSLEAREDSANVAQEECITVADSARNNQEVTKSVITLSDDESQASVKSVKQDDIFVVSLSDDSEMSIKDCKEDAASENCVVPEVVNSESKPELTAPQEPEPKPEPEPVSDRTESDRDVIDLAAHDADKQNSESEFQIATGDEPKVAGTKGKDCLFSLEDALDKLEAENSEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955785; iTF_00435001; iTF_00821179;
- 90% Identity
- -
- 80% Identity
- -