Tsin074883.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tenodera sinensis
Gene Symbol
-
Assembly
GCA_030765045.1
Location
CM060971.1:114613138-114615807[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00019 0.077 15.7 11.1 1 23 69 91 69 91 0.98
2 12 5.3e-06 0.0021 20.6 4.3 1 23 97 119 97 119 0.97
3 12 2.2e-07 8.8e-05 25.0 1.9 2 23 163 184 163 184 0.98
4 12 5e-07 0.0002 23.9 3.8 1 23 190 212 190 212 0.98
5 12 1.8e-06 0.0007 22.2 0.9 2 23 273 294 272 294 0.97
6 12 1.1e-06 0.00045 22.8 2.2 1 23 300 322 300 322 0.98
7 12 4e-06 0.0016 21.0 4.9 2 23 367 388 366 388 0.97
8 12 8.5e-09 3.4e-06 29.4 1.8 1 23 394 416 394 416 0.99
9 12 7.3e-06 0.0029 20.2 5.0 1 23 482 504 482 504 0.98
10 12 2.8e-06 0.0011 21.5 6.2 1 23 510 532 510 532 0.99
11 12 5.1e-06 0.002 20.7 8.0 1 23 660 682 660 682 0.97
12 12 2.6e-06 0.001 21.6 1.1 1 20 688 707 688 709 0.95

Sequence Information

Coding Sequence
ATGTACAGTGCTCAACCTGTGCTAAACATACCAGAAATGTCTGTCACAAACAATAACCCTGCATCATCTGGAATACCACTAGGCAGTGATTCCAGGAGAGAGCTTTGGCGTGCTTGTAGAGATTCTTCCCAAAAGAAGGGTGAAGAAGAATTGATAGTTCTCTCAGATCAGAGCTCTGATGACTCAGATGACTCTGATCGTCCATATCATTGCACAGTTTGTAAGAAGTCCTTCTGTGAAAAGCATCACCTTAAACGTCACATGTTGATACACTCTGGAGAGCGCCCATTCCAGTGTTTCCTCTGCAGTAAAAGCTTCACACAAAAGAGCCATCTAGAAAGACATGTATTTGTTCACTCACGATGGTCAGATTCTAGTAAATGTGATGGCTCTATATTGACTGATGTGAGTAATTTCAAACCAGAAGGTGAACAGTGTAAGGCAAATGTAACTGTGAAGGATTCTGCAGATGATATTTCATCAAGACAGTGCCCTGAGTGTAACAAGGTGTTTATCAATAGATATCATGTAAAGCGGCATATGCGAATACACTTGGGTGTAAGGCCTTTTGAGTGCAGTGTGTGTAGCAAGAGTTTTACACAAAAGGAACATCTCCAAAGGCATACACTGACACATTCAGTCAGTAGCAATCTTGCTGTCCCAGGTGCTGACTCCGTACATCATGCAGTAGGTGTTGACACATCCTCAGTGAATTCGGACATAGTTTCATCATTGCCGGtgcaggaaaatacaaatcaggaCATGGCGAGAGTTAATGGAGCAGTAAGTGAATCCAGTGAGGAGAATACTGTCTCACAGTGCCCAGTGTGCAATAAAGTATTCCAACAGAAGCGCAATATCAAACGTCACATGATGATACACACAGGTTACAGACCCTATAGTTGCAATATTTGTCAAAAGGCATTTAATCAAACGCAACACTTAGAACGTCATATTCTTACTCATGCTGCAGATTCTGAAAGACGTGTATCTGTGAGCTCAGAAAGTTTTGACTTGTCCAGTGAAAATGGTGAGGCAGTAGCTGTAAAGCTAGAACCTGAAGAGAACACCTCTCATCAGTCACCTGATTTTTCTAACCAATGTACTGAGTGTCACAAAACTTTTGCTAGCAGATACCACCTCAGACGACATTTACTCATTCATTCAGGTGTGCGACCATACCAGTGCCCAATTTGCAGTAAAGGCTTTACCCAAAGGGAACACTTGGAAAGACATATAAGAACCCATAGTTGGGCACAAAATAATGAAAGTAATGAAGGTGCCAGCTCTGTTGTACCTGTTGAAAAAGATGACAATGTGTCATTGCCTGTTTCAGCCATTAAAGTTGAATGTGTTTTGGAGTATGATAATTCTGAAGAATATAACACAAGTGGCAGTGAAAATGTTGAGCAACAAAGAGATGAGCAGGCAAGCGACCTTCCTCATAAATGCCAAATCTGCAATAAGATCCTCTCAAACAAATACCATCTGAAGAGGCACATGTTGATTCATTCAGGAGAACGTCCTTTCCAATGTCAGTTGTGTCCAAAAAATTTCACCCAGAAGTGTCACTTGGAGCGCCACATGCTTACTCATTCAGCTGTGCGCTGTGGAGTCTCCAGGGACAACACAGTGTCACCTCCAAAAGTAAAtgaatttaaaacaaacttaCCAGTACCCTTTGAGTTTCTAAAGGCAATTACAGAATCTGCTAATGGATTTAGTACAGTAAGTGCGGAATCACTGTTAAGTGATACAATGGATACCAGCACTTCAGAGGATTGCCCCAATAATGGTGGGAAAGAAATGTTATTGCACTCCTTAGGACTTGATCCTTCAGGAAAAGCCCCTCATACAGAGCGGGAAAAAGGACGTATCACTGGAGTACGACACTTTCTTGAGGATGTTGTTGTGTGTCTTCCCAGTGCAGAATCAACGGCAGATCCTGATAGTGATGACAGTGAAACCTTCAGGCCTCACGAATGTCCTGTTTGCCATAAAACATTCATCCAGAAGCACCATCTTAAACGCCACCTCATGATACACAACAATGAACGCCCATTCCAATGTCAGCTATGTGGCAAAGCATTTACCCAAAAGCAGCATTTAGAAAAACATACAATTAACAAATCATGCACCAAATCTGTACATAATTCAAAGGATAGAAGCTTAGATTCACAGAACTTTGGAACAGTTGCTAGTTCTGAAGAGAAACCATTGACTGATTTAGAAGTACCTTCAACTCAATCTGATTATACTTCAACAGTGAGCCAGGACAACAGTGTTCAAATGGATACTGAAAACATAGAACTAAAAGTGGATAAAGACAAACTTGATGAAAATAATGGTATAAAAAGTTCTTGCATGTCTCCTGTAGTGGAAAGTTTTAATGTTGATGCAGCTGCTGAAAACACaaagaatgagaaaatagaaccCAAACATGGAGACTGCCCCTTCATTGAAATCAGTGTGAAAGAAGAGTGTGGGTCCAACAGTGAAAGTGCAACTTGCAAGGTCAGTGACAATTTAAATAGCTTTAATGATAAAGAAGAGGGGAATGGCGGAAAGGATGAAAAACAGGAAAGTGCTTCCAGCTATTCAGAACAAGCTTTTACATTAGAACTGCTACACATTGCACCACAGCCAGAAGTggacaaagaaaaagaataa
Protein Sequence
MYSAQPVLNIPEMSVTNNNPASSGIPLGSDSRRELWRACRDSSQKKGEEELIVLSDQSSDDSDDSDRPYHCTVCKKSFCEKHHLKRHMLIHSGERPFQCFLCSKSFTQKSHLERHVFVHSRWSDSSKCDGSILTDVSNFKPEGEQCKANVTVKDSADDISSRQCPECNKVFINRYHVKRHMRIHLGVRPFECSVCSKSFTQKEHLQRHTLTHSVSSNLAVPGADSVHHAVGVDTSSVNSDIVSSLPVQENTNQDMARVNGAVSESSEENTVSQCPVCNKVFQQKRNIKRHMMIHTGYRPYSCNICQKAFNQTQHLERHILTHAADSERRVSVSSESFDLSSENGEAVAVKLEPEENTSHQSPDFSNQCTECHKTFASRYHLRRHLLIHSGVRPYQCPICSKGFTQREHLERHIRTHSWAQNNESNEGASSVVPVEKDDNVSLPVSAIKVECVLEYDNSEEYNTSGSENVEQQRDEQASDLPHKCQICNKILSNKYHLKRHMLIHSGERPFQCQLCPKNFTQKCHLERHMLTHSAVRCGVSRDNTVSPPKVNEFKTNLPVPFEFLKAITESANGFSTVSAESLLSDTMDTSTSEDCPNNGGKEMLLHSLGLDPSGKAPHTEREKGRITGVRHFLEDVVVCLPSAESTADPDSDDSETFRPHECPVCHKTFIQKHHLKRHLMIHNNERPFQCQLCGKAFTQKQHLEKHTINKSCTKSVHNSKDRSLDSQNFGTVASSEEKPLTDLEVPSTQSDYTSTVSQDNSVQMDTENIELKVDKDKLDENNGIKSSCMSPVVESFNVDAAAENTKNEKIEPKHGDCPFIEISVKEECGSNSESATCKVSDNLNSFNDKEEGNGGKDEKQESASSYSEQAFTLELLHIAPQPEVDKEKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00434991;
90% Identity
-
80% Identity
-