Tsin073058.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060971.1:51577477-51594510[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0049 8.2 8.5 0.0 8 40 78 109 74 113 0.71 2 2 2.3e-06 0.0039 19.2 0.0 2 40 175 213 174 217 0.91
Sequence Information
- Coding Sequence
- ATGCTGCTTGTTACTGTGAAGATCAGGACATTTGGATGGGAAACACTTCCACATACTCCCTACAGCCCTAACTTGGCACCCTTTGACTATCATATTTTCAGTTCTGTTAAGGAACAGAAGGGAGGCCAATGCTATGAGACTGAGGATATTAAAGAAGCAATGCCATCAGTATCTTTGTACAACAGAGTGCTGTATCCCCGGGTACGGCGAGACAGGTTGTTGCTAGAACAAGCAATGGATCGAGTCCTAGCTGGAGCCTCTGTCATGAGTGTGGCCAGGGATTGCAACATACCTCGTTCTACTCTGCGTGCCTTCATGAAGCGCAATGGACTTGTTTCATCTTTGGATTCTAAGGGACACAGACATTACAACTTATCAAGgaaaaACCTGAATGCAGCTGAGGCATTGCAGAATGTGCTTTGTGTTTTATCACCAAGTGGTGAAAGGGAGGCAACTATTACAAAGGCAGTGAGCCTGACAGGGTCTCCTGTTACACCACCAACTACAAGAATTCGGCGTTCAGAACAGGAATTGCAGAAGGCTGCAGAATGTGTACAAAAGGGCATGACTTTCCAGAATGTTTCAGACATCTTCAAAATACCTATATCGACAATCCGTTTCTACATGGCACGACGTGGCATTCTGCCCCAGCGCCGTAGAGGCCGTGCTGCACTGAATCAGAGTGCAGGTGTACCTTCACCACACTACCTCACCATGCAGTTCAAGTTACCTGACATGGGTAACCCACCAAAGCTTCCTTCTCCATGA
- Protein Sequence
- MLLVTVKIRTFGWETLPHTPYSPNLAPFDYHIFSSVKEQKGGQCYETEDIKEAMPSVSLYNRVLYPRVRRDRLLLEQAMDRVLAGASVMSVARDCNIPRSTLRAFMKRNGLVSSLDSKGHRHYNLSRKNLNAAEALQNVLCVLSPSGEREATITKAVSLTGSPVTPPTTRIRRSEQELQKAAECVQKGMTFQNVSDIFKIPISTIRFYMARRGILPQRRRGRAALNQSAGVPSPHYLTMQFKLPDMGNPPKLPSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -