Tsin047810.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060965.1:188911403-188918992[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-10 6.6e-07 31.2 0.0 3 41 20 59 18 61 0.90 2 2 0.14 2.3e+02 3.9 0.0 27 41 210 225 210 227 0.81
Sequence Information
- Coding Sequence
- atgccacgtgtgtacaaaagaagattgggaagccaaatatactgcaactatgaagaaaagaaacttgatgaagcagtaaaagcaattaaatcagggAAAATGTTGTATCGAAAAGCACAGGAATATTTTCAGATACCGTGGTCCACGTTAGAGAATAAAGTGAATCGCAAAAATCCAAAAGCAATCGGAACACCATCTGTCCTGGATaatgaagaagagaaaatgttGGGACATGGTATCCTTAGAGCATCTCATTGGGGATACCCTCTCACTTCAACTGACATTTGCTGCATCGTAAAAGGATACCTTGACAGAATGGGAAGAAAGGAGAAACAATTTACCGAGAATCTCCCTGGTGTTGAATGGATAAGGTCCCTTTTGAAAAGGCATTCTAATGTTCTTTCAGTTCGATTATCCGAGAACATCAAAAGAGCTCGTGCAGAGGTCACCCTTGAGACTGTCAGGGGATTTTTTGATAATGTGCGGAAGACCTTAGAAGGTACTTCACCGGAAAACATCATAAGCTATGATCAGACCAATTTATGTGATGATCCGGGAAGGAAACATGTGATTGTCAAGAGGGGCATTAAGGCTTCCACACCAGCATCGGCACCTACTCTTGACATCGAGATACCGTGGTCCACGTTAGAGAATAAAGTGAATCGCAAAAATCCAAAAGCAATCGGAACACCATCTGTCCTGGATaatgaagaagagaaaatgttGGGACATGGTATCCTTAGAGCATCTCATTGGGGATACCCTCTCACTTCAACTGACATTTGCTGCATCGTAAAAGGATACCTTGACAGAATGGGAAGAAAGGAGAAACAATTTACCGAGAATCTCCCTGGTGTTGAATGGATAAGGTCCCTTTTGAAAAGGCATTCTAATGTTCTTTCAGTTCGATTATCCGAGAACATCAAAAGAGCTCGTGCAGAGGTCACCCTTGAGACTGTCAGGGGATTTTTTGATAATGTGCGGAAGACCTTAGAAGGTACTTCACCGGAAAACATCATAAGCTATGATCAGACCAATTTATGTGATGATCCGGGAAGGAAACATGTGATTGTCAAGAGGGGCATTAAGGCTTCCACACCAGCATCGGCACCTACTCTTGACATCGAGGAGCACGAGACGTGCTTGCGACCCCATGATGGAGGCAAGAGGATGTTCACATTCCCAGATGTAGAGGACGAAGACACAGTAATGAAAGACCAGATCAGTAAAATACTTCCAACACCCAAggagaaaagaggcatttttgtttttgataaggacgctctataa
- Protein Sequence
- MPRVYKRRLGSQIYCNYEEKKLDEAVKAIKSGKMLYRKAQEYFQIPWSTLENKVNRKNPKAIGTPSVLDNEEEKMLGHGILRASHWGYPLTSTDICCIVKGYLDRMGRKEKQFTENLPGVEWIRSLLKRHSNVLSVRLSENIKRARAEVTLETVRGFFDNVRKTLEGTSPENIISYDQTNLCDDPGRKHVIVKRGIKASTPASAPTLDIEIPWSTLENKVNRKNPKAIGTPSVLDNEEEKMLGHGILRASHWGYPLTSTDICCIVKGYLDRMGRKEKQFTENLPGVEWIRSLLKRHSNVLSVRLSENIKRARAEVTLETVRGFFDNVRKTLEGTSPENIISYDQTNLCDDPGRKHVIVKRGIKASTPASAPTLDIEEHETCLRPHDGGKRMFTFPDVEDEDTVMKDQISKILPTPKEKRGIFVFDKDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410699;
- 90% Identity
- iTF_01410699;
- 80% Identity
- -