Tsin088497.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- JAUKNM010000106.1:429299-429904[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 1.8e-09 39.4 0.0 3 41 20 59 18 61 0.93 2 2 3.9 6.6e+03 -0.8 0.1 11 21 189 200 188 200 0.83
Sequence Information
- Coding Sequence
- atgccacgtgtgtacaaaagaagattgggaagccaaatgtactgcaactatgaagaaaagaaacttgatgaagcagtaaaagcaattaaatcagggAAAATGTCGTATCGAAAAGCACAGGAGTACCTTCAGATACCGCGATCCACGTTAGAGAATAAAGTGAATCGCACAAATCCTAAAGCAATCGGAACACCATCTGTCCTGGATaatgaagaagagaaaatgttGGTACATGGTATCCTTAGAGCATCTCATTGGGGATACCCTCTCACTTCAACTGACATTCGCTGCATTGTAAAAGGATACCTTGACAGAATGGGAAGAAAGGAGAAGCGATTTACCGACAATCTCCCTGGTGTGGAATGGATAAGGTCCTTTTTGAAAAGGCATTCTAATGTTCTTTCAGTTCAATTATCCGAGAACATCAAAAGAGCTCGTGCAGAGGTCACCCTTGAGTCCGTCAGGGGATTTTTTGATAATGTGCGGGAGACCTTAGAAGGTACTCCACCAGAAAACATCATAAACTATGACGAGACAAATTTATGTGATGATCCTGGAAGGAAACATGTGATGTTAAGAGGGGCATTAAGCATGCAGAGAGGATAA
- Protein Sequence
- MPRVYKRRLGSQMYCNYEEKKLDEAVKAIKSGKMSYRKAQEYLQIPRSTLENKVNRTNPKAIGTPSVLDNEEEKMLVHGILRASHWGYPLTSTDIRCIVKGYLDRMGRKEKRFTDNLPGVEWIRSFLKRHSNVLSVQLSENIKRARAEVTLESVRGFFDNVRETLEGTPPENIINYDETNLCDDPGRKHVMLRGALSMQRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410714;
- 90% Identity
- iTF_01410715;
- 80% Identity
- -