Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 7.6e-07 0.0013 20.7 0.0 5 38 44 78 40 83 0.88

2 3 0.013 22 7.1 0.0 23 35 229 241 211 244 0.82

3 3 4.2e-07 0.0007 21.5 0.0 1 39 259 296 259 302 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	7.6e-07	0.0013	20.7	5	38	44	78	40	83	0.88
2	3	0.013	22	7.1	23	35	229	241	211	244	0.82
3	3	4.2e-07	0.0007	21.5	1	39	259	296	259	302	0.86

Coding Sequence: ATGGTGAGGCAACCCCCCTGTGTAATGCCCactgttgtatctgtccttgaaGAGGCCACAGAGTTCCCACCTGTTGCCGTACCATCCCAGCGCCACAGCTACCATGGCAAGCAGTACTCGCCCAAAGTCCTGAGCCAGGCAGTGGAGGATTTCCTCAGTGGCAGGTTCAGCTCTATTCGTGCATGTGCTCGCCATCACGGCGTGCCCATGACCACACTGCATTACCGGGTTAAACTTATGATTGCGAGAGTAAATGTGAGATACATAAAGAAAGCACTAGGAGTATCAAAACCAACAAAGTCAAGACTCGTATACCTGCTAGCAAGGGAAACATTCCTCATAGAGGAACTCCAGACAAGCGTGCTCCTACCAAGCACCAGCGCTTCACATAATCTCCTAGCTTCactgaagaggaaaagagaagaagtaCAACTAGAATTCTACTGCACAGGAGCCATGATGGACCATGCATGCACAAAGGAAAATATTGAAATGAGAAATGTTTTCACCAGGTTGGCAGTCCATGGATTCTACCACATGATATACAAGAACAAGAACTACCACGAGCCAAATATGGACTGTGAATGGCTGGTGCGGTTCCGGGCACCACGGCGGTCCTACTCTAGCTCGAGCCTGTGGCAGGCACTAATGGATGTCAAGATGGGGGAGAGCATCTACAGTTCTGCCAAGTTGCATGGGATTCCTCGCAAGACACTTCGCAACTGGATGCAGCCGGTGGCATGGCCGCCGAAGGTGCGGCCCTATCGTCAGTACACCAATGACAACCTGTGGGCTGCTCTGATGGATGTCAAGTGTGGTGGCAGCGTCTACCGTGCCTCTAAGGAGCACGGAATCCCTCGCAAAACTTTGCGCAACTGGATGAAACGCTGGAACATCAAGAGCAAGTACGCTGCCCCCACCAGGAAGGTGGAGTATGCAGTGCCACACACCAACTTAACCctttag
Protein Sequence: MVRQPPCVMPTVVSVLEEATEFPPVAVPSQRHSYHGKQYSPKVLSQAVEDFLSGRFSSIRACARHHGVPMTTLHYRVKLMIARVNVRYIKKALGVSKPTKSRLVYLLARETFLIEELQTSVLLPSTSASHNLLASLKRKREEVQLEFYCTGAMMDHACTKENIEMRNVFTRLAVHGFYHMIYKNKNYHEPNMDCEWLVRFRAPRRSYSSSSLWQALMDVKMGESIYSSAKLHGIPRKTLRNWMQPVAWPPKVRPYRQYTNDNLWAALMDVKCGGSVYRASKEHGIPRKTLRNWMKRWNIKSKYAAPTRKVEYAVPHTNLTL

Sequence clustering based on sequence similarity using MMseqs2