Basic Information

Gene Symbol
nfxl1
Assembly
GCA_963966145.1
Location
OZ014538.1:25218692-25223394[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 2.8e+04 -5.2 2.1 4 6 119 121 118 122 0.59
2 18 2 2.8e+04 -4.7 1.9 15 19 160 164 160 164 0.85
3 18 0.1 1.4e+03 0.0 0.4 4 10 195 201 194 201 0.95
4 18 2.4e-08 0.00033 21.2 17.0 1 19 209 226 209 226 0.99
5 18 0.00032 4.4 8.0 15.7 1 19 262 280 252 280 0.87
6 18 0.32 4.4e+03 -1.6 0.9 5 10 304 309 304 309 0.94
7 18 5.1e-09 7e-05 23.4 15.2 1 19 315 333 315 333 0.99
8 18 0.34 4.6e+03 -1.6 1.5 5 10 357 362 357 362 0.94
9 18 3.3e-05 0.45 11.2 8.6 1 18 368 385 368 386 0.92
10 18 0.83 1.1e+04 -2.9 0.2 1 4 395 398 395 399 0.87
11 18 2 2.8e+04 -4.7 2.3 5 10 409 414 409 414 0.91
12 18 0.00044 6 7.6 16.5 1 18 420 437 420 438 0.94
13 18 2e-10 2.8e-06 27.8 10.8 1 18 447 464 447 465 0.97
14 18 0.00022 3 8.6 7.1 9 19 513 523 512 523 0.92
15 18 0.033 4.6e+02 1.6 5.1 4 12 535 543 533 543 0.88
16 18 2 2.8e+04 -5.9 6.1 14 19 571 576 571 576 0.91
17 18 1.3 1.8e+04 -3.5 0.6 9 12 593 596 593 596 0.77
18 18 0.0018 25 5.6 6.8 1 12 612 623 606 623 0.80

Sequence Information

Coding Sequence
atgaaTAATCGAAAAAAAGAACATAATGTGTGGAACAAAAATcgtaacataaaaaaaaataatgcttCACAAAACTCGCCGTTACCTGGAGAACTTAAATTCAAAGAAGCCCATGGAAAATTACAAGCAGCGATTCAAAAACATGTTACAGGTTATGAATCTTCCTCATCAGAAGAAGAGTTAGAATCAGAAAATATTATGGatgaaatcattaaaaattacaccAACACAGgaggaaaaaatgaaaatttagagCGCACCAAGACGTTTCTCCAAGATTCATTTTTATCTGGAACAGCTAcatgtttaatttgtatttcacGAATAAAAAGGGATTCTGCAGTATGGAACTGTCACAAATGCTATTGCGTATTTCATCTTAACTGCATCCAGAGATGGTCAAAAGATAGTATTTACCAGAAAAAGCAGATACAAGAAAGCCCAATTCAAGTTCATCAAATCACTTTAACTTGGGGTTGTCCAAAATGTAGACATGGCTATCAATTAGAAGATATACCAGAAAAGTATCTTTGCTTTTGTGAAAAAACTGTTGACCCTAAGCTACAACCTTTTCTAGTTCCACACTCTTGTGGAGAGATATGTGGAAAAGATTTAGTTCCATCTTGTGGtcataaatgtttattattatgtcATCCAGGTCCTTGTCCACCTTGTCCTGTAACAGTTAATGTTAGTTGTTATTGTGGCACACAACAACCTGTTACAAGAAGATGTAGTGATAAACAATGGGCTTGTGGTAATCCTTGTGGAAAACTGTTGATTTGTCAGAAGCACAGCTGTTCTAATCTGTGTCATGCTGAAGATTGCAAACCTTGCCCTAAGAAAAGTTTGCAGAAATGCCTATGCAAAGCAAATCAAAAATTACGAGAATGTGCAGATCCTATATGGAAATGTGACGAGGTTTGTAATAAACCACTTCATTGTGGCAATCATAAATGCTCAGTTCAATGTCATGAAGGTGAATGCGATCCTTGCCCAATGACAAAATCAAGATTGTGCCCATGTGGCAAAAGTAAATATCAGTTGCCTTGTACTGAAGAAACACCTACATGTCAAGATACTTGTGATAAGTTGCTGACATGTAATCTTCATAGATGTAACCAAAGATGTCATAAAGACGCCTGTGGTGTGTGCCTTGAAATCGTAGAAAAATCTTGTAAATGTGGTTTACATTCCAAAGAAGTTCAATGTTATAAGTTATACACATGCGAAACCAAATGTAAACGAATGAAAGACTGCAATAAACATCCCTGCAATAAAAAGTGTTGTGATGGTAATTGTACTCCGTGTGAAAAGCCCTGTGGACGTACACTAAACTGTGGAAACCACAAATGTAATTCAGTCTGTCACAGAGGTTTGTGTTATCCATGTAATCAAACAGAAATGGTTTCATGTCGATGTGGACAAACAAAATTGACCGTTCCATGTGGACGTAAATACAAAACAAGGCCTCCTAAATGCAACAAACAATGTTTagtaCCACCGGATTGCAATCACGAAGCAAGAGAATTacacaaatgtcattttggtGATTGTCCACCTTGCAAACAAATTTGCAATAAACGTCTTCCTAATTGTGTACATTTGTGTAGCTCACCATGTCATTCTGCAGTAATTGTAAAGGTAGAGGGTCAAAAACCAACCATGCCGTGGGAACAGACCAAACCTCATCTGGAAAGGAAGGCATTACCTTGTCCAGATTGCCCAGTTCCAGTGCCTGTAACTTGTTTAGGCCTTCACGAAACCACTGATTGGCCGTGTCATAAGGCAGTGCCTTCTAGTTGTCATAGACCGTGCGGACGATTGCTTCATTGCGAAAATCATAAGTGTACTCTTCCATGTCACCCAGTCGAGTCTCCAAATGACAAGGTTGGTATAATACAAGTGATCAAGAACTCAAGAAGGACTATTTCAGTTGTTCGAGACCCAACAGCGTTCGTTCCCGCGATGGTCATATGTACAGCCGCCCGCAAAAGAATCGAGCCGACCCTCTGCAAGGAAATAATCACCAATCCATATTTCGACAAAGGGACCTGA
Protein Sequence
MNNRKKEHNVWNKNRNIKKNNASQNSPLPGELKFKEAHGKLQAAIQKHVTGYESSSSEEELESENIMDEIIKNYTNTGGKNENLERTKTFLQDSFLSGTATCLICISRIKRDSAVWNCHKCYCVFHLNCIQRWSKDSIYQKKQIQESPIQVHQITLTWGCPKCRHGYQLEDIPEKYLCFCEKTVDPKLQPFLVPHSCGEICGKDLVPSCGHKCLLLCHPGPCPPCPVTVNVSCYCGTQQPVTRRCSDKQWACGNPCGKLLICQKHSCSNLCHAEDCKPCPKKSLQKCLCKANQKLRECADPIWKCDEVCNKPLHCGNHKCSVQCHEGECDPCPMTKSRLCPCGKSKYQLPCTEETPTCQDTCDKLLTCNLHRCNQRCHKDACGVCLEIVEKSCKCGLHSKEVQCYKLYTCETKCKRMKDCNKHPCNKKCCDGNCTPCEKPCGRTLNCGNHKCNSVCHRGLCYPCNQTEMVSCRCGQTKLTVPCGRKYKTRPPKCNKQCLVPPDCNHEARELHKCHFGDCPPCKQICNKRLPNCVHLCSSPCHSAVIVKVEGQKPTMPWEQTKPHLERKALPCPDCPVPVPVTCLGLHETTDWPCHKAVPSSCHRPCGRLLHCENHKCTLPCHPVESPNDKVGIIQVIKNSRRTISVVRDPTAFVPAMVICTAARKRIEPTLCKEIITNPYFDKGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-