Tmol010094.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014541.1:1250549-1252261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.91 10.7 3.2 1 19 139 157 139 162 0.93 2 12 0.0012 0.098 13.7 1.8 1 23 171 194 171 194 0.98 3 12 0.28 24 6.2 4.8 1 23 208 231 208 231 0.96 4 12 0.12 10 7.4 7.5 2 23 241 262 240 262 0.97 5 12 0.00036 0.031 15.3 1.7 1 23 271 294 271 294 0.96 6 12 0.015 1.3 10.3 6.4 1 23 303 325 303 326 0.94 7 12 1.5 1.3e+02 3.9 4.5 2 23 335 357 334 357 0.94 8 12 0.0015 0.13 13.4 0.8 2 23 367 389 366 389 0.95 9 12 0.22 19 6.6 3.4 1 23 398 421 398 421 0.93 10 12 0.02 1.7 9.8 4.2 1 23 430 453 430 453 0.94 11 12 3.1 2.7e+02 2.9 3.7 2 19 466 483 465 488 0.90 12 12 0.067 5.7 8.2 2.9 1 23 528 551 528 551 0.97
Sequence Information
- Coding Sequence
- ATGGCAAATTTGGAACATACAGGGAGCATCCTGAAATTTGAATGCGGAAGGATTTACGATTACGACAGATGTCCTTACATGAGCAGATCACCTTTTTCTCAGCAGTTCCCATCATTCAGTTgcgaaacaaattttctagAAAAGTACAATTGCAAAGATTGCGATTTTGAAAGCGATcttgtgataattttgaatcaaCACATCAGAGAACATCACATAAAGAGAATCGACGAACCGAACAATTACATTGAAGTAAAAAGCTACATCTGTCGAGAGTGCTCATTTGAAACATATTCAGCGTTAATGTGGATCAAACACTTGGATACTTTATGTATTAAGACGAAAGAAGATTTTGAGAAAGTAACGTTTGGTAACGATGCAAAACTGCATCTCTCCAGAGATGACGTTCAACGGTTCAGCTGTGATAAATGTAACTATAAGACAAATCGAAGCTACAGCTTAAAACATCACGACCTGATGATGCACacgtcaaataaaaaaacgtcCTGGTTTCAATGTGAAAAGTGCGCTTACATAACAAACCGAGAATACAATTATAAACGTCACATAACAACTCAACACAAATCTGATGAAGAAGAGATCAGAAAATCAGGATTTGGATTCAGGTGTGACAAGTGCGACTTTACAGCAAAACACAGATACAGAGTGAAGCGTCATAAACTGATCAAACACACATCAGATGAAGAAGCGTTGTGGCTGCGGTGCGAACAGTGCtcttacaaaacaaaactgaaacaCTGTCTTAAACGTCACATGACTATGCACAAATCCGACGAAGAAACAAAGTGGTTTGACTGCTTCAATTGTGAGTACAGGACTCGTAGTAAAGGAAGCTTGAGACGTCACATGTTGGTGAAACACACCTTGTCGGAATTTGTGCAGTGGTTTGCTTGTGACAAGTGTCAGTACCAATGCAAAACCAAAGACCTCTTGTACAAACACGTAAAACAGCACCATTCGGACGTAAAAATCGAATGGTTGAAATGCGACAAATGCGACTTCAAAGCAAAACAAAGGTACAGAATGAAGCATCACAAACTGATCAAACACACACCAGACGAAGAAGTGTTGTGGCTGCGGTGCGAACAGTGCtcttacaaaacaaaactgaaagaCTCTCTTAAACGTCACATAATAGTTATGCACAAATCTGACGAAGAAGGAAATTGGTTTTACTGCTTCAATTGTGAGTACAGGACTCTGAAGAAAGAAAACTTGAGACGTCACATGTACCTGAAACACACCACACCCGAAGCTGTGCACTGGTTTGCTTGTGACAAGTGTCACTTCCAGACCAAAACCAAATACGACTTGTACAGACACGCAAAACTGCGCCATTCGGACGGAAAGATCGAAAAGGACATCGAATGGTTGAAATGCGACAAATGCGACTACAAGGCACGGCAAAGGTGCCGACTGCGGCAACACGATCGGGACAAGCACACGCCCAAAAAAGAGGTGGTGTGGTTTCAATGTGAACAGTGCCCCTACAAAGCAAAATGGAAATACCGCCTGAAATGTCACGTGAACGTGCACAAACCCGACGAAGAAGCGGAATGGTTCTACTGCTTCAACTGCGAGTTCAGGGCGAAGAGAAAGCAGAGTGTGAATAATCATATGCGACTCAAGCACACACCTCAGAAGCCGTGCGATGGTTCACTTGTGACAAGTGCCAGTGCAAATCTTACCTGA
- Protein Sequence
- MANLEHTGSILKFECGRIYDYDRCPYMSRSPFSQQFPSFSCETNFLEKYNCKDCDFESDLVIILNQHIREHHIKRIDEPNNYIEVKSYICRECSFETYSALMWIKHLDTLCIKTKEDFEKVTFGNDAKLHLSRDDVQRFSCDKCNYKTNRSYSLKHHDLMMHTSNKKTSWFQCEKCAYITNREYNYKRHITTQHKSDEEEIRKSGFGFRCDKCDFTAKHRYRVKRHKLIKHTSDEEALWLRCEQCSYKTKLKHCLKRHMTMHKSDEETKWFDCFNCEYRTRSKGSLRRHMLVKHTLSEFVQWFACDKCQYQCKTKDLLYKHVKQHHSDVKIEWLKCDKCDFKAKQRYRMKHHKLIKHTPDEEVLWLRCEQCSYKTKLKDSLKRHIIVMHKSDEEGNWFYCFNCEYRTLKKENLRRHMYLKHTTPEAVHWFACDKCHFQTKTKYDLYRHAKLRHSDGKIEKDIEWLKCDKCDYKARQRCRLRQHDRDKHTPKKEVVWFQCEQCPYKAKWKYRLKCHVNVHKPDEEAEWFYCFNCEFRAKRKQSVNNHMRLKHTPQKPCDGSLVTSASANLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410344; iTF_01410409; iTF_01410351; iTF_01410358;
- 90% Identity
- -
- 80% Identity
- -