Tmol001580.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014538.1:4462649-4469620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-06 0.00011 23.0 0.5 1 23 35 57 35 57 0.98 2 11 3.1e-05 0.0027 18.7 5.7 1 23 63 85 63 85 0.97 3 11 0.0011 0.09 13.9 2.2 1 15 169 183 169 184 0.94 4 11 0.34 29 6.0 0.3 8 23 184 199 183 199 0.92 5 11 0.0001 0.0085 17.1 1.0 2 23 206 227 205 227 0.97 6 11 3.3e-05 0.0028 18.6 6.6 1 23 233 255 233 255 0.98 7 11 8.4e-07 7.2e-05 23.6 2.7 1 23 280 302 280 302 0.98 8 11 2.7e-05 0.0023 18.9 0.6 1 23 308 330 308 330 0.92 9 11 0.00044 0.037 15.1 1.3 2 23 337 359 336 359 0.96 10 11 0.65 56 5.1 0.4 1 17 365 381 365 387 0.83 11 11 0.3 26 6.1 0.1 3 13 395 405 394 418 0.87
Sequence Information
- Coding Sequence
- ATGGTGAAGGAACTGCAAGTAAAGGGGGAGCAAGGCATAGAGGATATAAAAGtcaaaTTCTGTCTAATAAAGCACAAAAGAATCCACCAAGGAATCAGACCCTACAAATGTGACTTGTGTGACAAAACTTTTCAACAATCGGGCGCCTTGAATGTACACAGACGTGGACACACAGGCGAGAAACCCTTCATGTGCGAATATTGCAGCAAAGGGTTTACCAGTAACCATTCGCTCAAGCGACACCACAGCGTCCACCAGAAAGGACCATACATTCCATGTCCCACTTGTGCTAGTCATGAGTCTGAAGAAATCAAGCCTGATATACATGATGTCAAGCTAGATGGTGTCAAGTCTGATGATGTCAAGCTAGATGATGTCAAATCAGATGATGTCCAGTCAAATGATGTTGAGCTAGATGATGTCAAGGCAGATGATATCAAGCTAGATGATGTCAAGCTAGAAACAGAAATTAAGCTTGAACCAGACCcggataataaaaaaatatacaaatgtGAAGGATGTGACAAAACATTCAAGCATAAATCCAGCAAAGGGTTTTTCAGTAGCGCTTCGCTCAAGCGACACTACAGCGTCCACAAGAAAGGACCCTATATTCCATGTCCCACTTGTGGTAAATCTTACGCCAacagtttattattaaaatgtcacaTGAGGAGACATAATCCCGTCAAGCGGCACACTTGCGAAACATGCAAGAAGAGCTTTCACGAATCGACTGGACTAAAGAGGCACATGAGGACGCATTCCGGCGAGACTCGATATTCTTGCATCGCTTCTCtaaaaatgcataaaaaaCTCCACCAGAACGTCAGACCTCACAAATGTGACATGTGTGACAAATCCTTTATACAAAAAGGCAGCTTGGAAAATCACAGGCGTCAACACACAGGGGAGAAACCTTTTATTTGCGAATATTGCAGCAAAAGTTTTGCCAGTAGTGATGCCCTCAAGCAACATGACAACACCCACAAGAAAGGACCATACCTTCCCTGTCCTACTTGTGGGAAATTCTACCCCAAcaatttctatttaaaatgccACATCAGGAAGGCTCACACTGATGACAAGGAGTACACTTGCGAGATGTGCCAAAAGAACTCTCATCAATCTAATGGTCTAAAGATCGACATGAAGACGCATTCCGGCGAGACTTCTAATCCTTGCACCTTGTGCAATAAGAAATTTGCGAGTTCATTGCGATTGCGACTTCTTGGGCATATCAAGAAGGAACATTCTGTGTTGCCACTGATGTAA
- Protein Sequence
- MVKELQVKGEQGIEDIKVKFCLIKHKRIHQGIRPYKCDLCDKTFQQSGALNVHRRGHTGEKPFMCEYCSKGFTSNHSLKRHHSVHQKGPYIPCPTCASHESEEIKPDIHDVKLDGVKSDDVKLDDVKSDDVQSNDVELDDVKADDIKLDDVKLETEIKLEPDPDNKKIYKCEGCDKTFKHKSSKGFFSSASLKRHYSVHKKGPYIPCPTCGKSYANSLLLKCHMRRHNPVKRHTCETCKKSFHESTGLKRHMRTHSGETRYSCIASLKMHKKLHQNVRPHKCDMCDKSFIQKGSLENHRRQHTGEKPFICEYCSKSFASSDALKQHDNTHKKGPYLPCPTCGKFYPNNFYLKCHIRKAHTDDKEYTCEMCQKNSHQSNGLKIDMKTHSGETSNPCTLCNKKFASSLRLRLLGHIKKEHSVLPLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -