Tmol003894.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tenebrio molitor
Gene Symbol
-
Assembly
GCA_963966145.1
Location
OZ014538.1:43422568-43426615[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.073 6.2 8.1 4.1 5 21 14 30 12 31 0.92
2 16 0.021 1.8 9.8 4.8 1 20 40 59 40 61 0.95
3 16 0.0023 0.2 12.8 4.7 1 21 74 94 74 95 0.95
4 16 0.22 19 6.6 5.9 1 23 103 127 103 127 0.92
5 16 4e-05 0.0034 18.3 1.6 1 21 185 205 185 206 0.93
6 16 0.0087 0.74 11.0 2.2 1 23 214 237 214 237 0.94
7 16 8.5e-06 0.00072 20.5 1.0 1 22 246 267 246 267 0.96
8 16 0.009 0.77 10.9 5.2 2 23 276 298 275 298 0.95
9 16 0.0026 0.22 12.6 3.3 1 21 337 357 337 358 0.97
10 16 0.00023 0.019 16.0 0.2 1 23 366 391 366 391 0.96
11 16 0.0022 0.19 12.9 2.6 1 20 394 413 394 415 0.95
12 16 0.29 25 6.2 11.8 1 23 423 446 423 447 0.96
13 16 0.00037 0.032 15.3 3.0 1 21 455 475 455 476 0.96
14 16 0.13 11 7.3 7.4 1 19 484 502 484 505 0.95
15 16 6.7e-05 0.0057 17.6 0.9 3 21 520 538 518 539 0.94
16 16 0.00072 0.061 14.4 0.1 3 23 549 570 547 570 0.97

Sequence Information

Coding Sequence
ATGCTTGCAGCGAAAACTGCGCGCTATGGGTATCATTGCGGGTGTGGAAAGTCGTACAAGCACCGAGCCTCGCTCCATAACCATCGCAAGTTCGATTGCGGCAAAGAAACAGGAAGGTACCAGTGCCACCAGTGTCACGCCAAATTCTACCACAGAATATCGCTCGTCAACCACCTTCACTTAAATATGTGTCAAAATTACGTGGAACATAACGGCCTTTATTTCTGtaccaaatgttttaaaacGTACAAGCACAAGGGCAACATCCGGAGACACTTGAAATACGAGTGCGGCAAAGAAGCCAGGTTTCAGTGCAGTATTTGTTCTTTCAGGTGCAAGAGACTGGACTATCTCAAGTTCCACATGAAGTCCACCAAGCACCAGCAGAGCGACTGCAAAGTCGAAAAAGTTCGACTCGATTTTATTGCAACAGATGCGTCAAATCCTACAGCGCTCCGGAGAACCTGCGAAGACACCAGAGAGTGGAGTGCGGCAAAGAGAAAAAGATTAGATGTGGCCTGTGCAGTCAGAGATCCGTACCAGGAGAAGGGGTTCTTTTGTAAAAAGTGCGGCAAATCCTACACTTTAAGGCGGAATTTGCAGAGGCACGAAAAAGTCGAGTGCCAGAAGGAAAAGAAATTTGTCTGCGGGATTTGCAGTCACAGAACGTACTACAAGAGCGACTTGCGCGTCCACATTTTTAACAAGCACGGCGTCCAGTCATTTAAGCAGCGTTTCTATTGCGATCGTTGTGGAAAATCCTACacgattaaaaataatttacgaaGACACCAGAGGGTCGAGTGTGGCCAAGAGAAGAAGCTCAGATGTCACGTCTGTGACCACAAATTCTACTACAAACAAGAGCTGATAGGACACATGCATATCAAACACAATCTCTTACCTTTAACCAAACCTATCGTCGATCATAATAACGTGTCGCGTCGACGAAGAATTAGTGTGTCGAAAAAGGAACCGCTGAATAAACCTAGCTTTAGTCGTATAATTTACCCTTGCACCAGATGCAGTAGAAAGTACAAACACAAGGCGTCGCTGTACAACCATCAGCGCTTTGAATGTGGCAAAGAAAAGTCTTTTATATGTCCGATGATGGACTGCCCGTACAAAACCAAACGGAAAGGGAGCTTAAAGTCTCACATTCTCATCGTACACAAAGAATTCGAGTGTTTCAAGTgtcacaaaatttacaaacataACGCCTCCCTCTGGAACCATGTTAGTTTTGACTGTGGCAAGTCGCCACGTTTTCATTGCAGCTATTGTCCGTACCAGGCGCGGAGGAAGCACCACTTGCACTCGCACCTCCGCTCCAGCCACCACCTCGACGTCAAAAAGAGTACGCACAAGTGCCCCAGGTGTGACAAAGTCTACAGGCACACTCAGTCCCTGCGGACGCACGTGCGCTTCGAGTGCGGGAAAGACCCCACCTTTCGGTGCCAGCACTGCTCGTACGTGGCCAAACGCAAGCACCACCTGAAGACTCACAACTGTTGGTGTACTCAGTCGACCCGTAGAACTATTGAAGAGCGGATTGCGTGTCCTAAGTGCAGGAAAACGTATAAGTATAAGACGAGTCTGCGACGCCACCTAAAATACGAGTGTGGGAAGGGCGCTTCTTTTGGTTGCCCTTATTGTGGCTACGCTTCTAAACAAAAGTACCCTCTCATTAACCACGTGAAAGTGACCCACCCGGACCGCCTGGCCACTTTCCTGCTATTTTACAAATCGATGAAGGGACAATGA
Protein Sequence
MLAAKTARYGYHCGCGKSYKHRASLHNHRKFDCGKETGRYQCHQCHAKFYHRISLVNHLHLNMCQNYVEHNGLYFCTKCFKTYKHKGNIRRHLKYECGKEARFQCSICSFRCKRLDYLKFHMKSTKHQQSDCKVEKVRLDFIATDASNPTALRRTCEDTREWSAAKRKRLDVACAVRDPYQEKGFFCKKCGKSYTLRRNLQRHEKVECQKEKKFVCGICSHRTYYKSDLRVHIFNKHGVQSFKQRFYCDRCGKSYTIKNNLRRHQRVECGQEKKLRCHVCDHKFYYKQELIGHMHIKHNLLPLTKPIVDHNNVSRRRRISVSKKEPLNKPSFSRIIYPCTRCSRKYKHKASLYNHQRFECGKEKSFICPMMDCPYKTKRKGSLKSHILIVHKEFECFKCHKIYKHNASLWNHVSFDCGKSPRFHCSYCPYQARRKHHLHSHLRSSHHLDVKKSTHKCPRCDKVYRHTQSLRTHVRFECGKDPTFRCQHCSYVAKRKHHLKTHNCWCTQSTRRTIEERIACPKCRKTYKYKTSLRRHLKYECGKGASFGCPYCGYASKQKYPLINHVKVTHPDRLATFLLFYKSMKGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-