Tmol006976.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- ECU03_0790_1
- Assembly
- GCA_963966145.1
- Location
- OZ014539.1:28675623-28681282[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.034 2.9 9.1 1.6 1 23 109 131 109 131 0.99 2 15 2.2 1.9e+02 3.4 0.9 5 21 140 156 137 160 0.85 3 15 2.6e-05 0.0022 18.9 0.6 1 23 169 191 169 191 0.97 4 15 7.4e-05 0.0063 17.5 0.3 3 23 196 217 195 217 0.94 5 15 0.0063 0.54 11.4 8.1 1 23 226 248 226 248 0.99 6 15 0.4 34 5.7 0.3 2 23 254 275 253 275 0.95 7 15 0.0057 0.49 11.6 3.6 1 23 281 303 281 303 0.98 8 15 0.043 3.6 8.8 0.5 1 23 306 329 306 329 0.94 9 15 0.00097 0.083 14.0 5.0 1 23 338 360 338 360 0.98 10 15 0.0046 0.39 11.8 2.5 3 19 369 385 367 391 0.92 11 15 7.1e-06 0.00061 20.7 1.6 2 23 402 424 401 424 0.95 12 15 0.2 17 6.7 5.9 1 23 431 453 431 453 0.95 13 15 4.1e-05 0.0035 18.3 1.1 1 23 460 483 460 483 0.95 14 15 9.5e-08 8.1e-06 26.6 2.0 1 23 489 511 489 511 0.98 15 15 0.00011 0.0093 17.0 6.3 1 23 517 540 517 540 0.94
Sequence Information
- Coding Sequence
- atgagGCACGTACGAATAACCGGCCAAAATATTAAGAAACTGACCTCATTCAAAAACCagATAGGCGATATACTTAAGGAATTGAATAAATTTGACGAAAATGATAAGACAGAAGCAATGTCCTACATACGAAACTACATTAGTAATGACTCGAACGTTGCTTGTTCTTCAGACTCATCTAAAGCAACTCGAAGAAAAGGTACATCTGCAGAGAAAACTAACAAGTATTGTAAAGTGCAAAAAAAGAGGTACAACTTGAGGTGTGAcaaaaataggaaaataaaatattcagatggcaacactgtttctctgaaaaaaatcatttttaaatgtaaagttTGTAATGCCAGTgagaaaactaaaaaactCATGTTGAAACATGTCCAGACTCATGTGGGGGCGCCTCGGTCTTGCATCAAGTGTAAGAGAACTTTTAATGGCAGTGTCCCATTCAAATGGCATCAGAGTAACTACTGCCACCCTTCATTCTATGACAAgtggaaatttaaatgcaactTATGTCCCAGAGAGTTTGTTTCAAAAAGGACCTTAGAGAGTCACTTGCAGGGACACAAACGCAATAATTGCTCTTACTGTGATAAAGTACTGACACGCCGGGTGCAGCTTATACGACACTTACTGGAAGTACATGCAATAAAACTTGAGAGAGATACTTACAAGTGTGACCACTGTGAAAAGAGATATATCAAAAAGTGCTcgttattttatcatttaagACAACATCTTCCAGACAAGTGTGTTTGTTTGGAGTGTGGACAGATTAGTGACTCTATTGAAGAATATGAAGCACACAAAAAACAGCACGATCTTCAGAAGCATTTCAATTGCTCCAAATGTGGAGACAAATTTTCCAGAAGACAACAGTACTTGTACCATTTGAAAcgcCACAATCAGTACAGATGTGTTACTTGCAATGAGTCTTATGCATCGAGAGTTAAGGCCATCAAGCACAAGCAACAGGGTCATCAAGTTGAGGGATTAAATCCGAGATTCATTTGCCCCCATTGTCCCATAGCTTTCCACAGAGAAAGTCGGTTTCATATCCACATGAGGAAACACACAGaagAAAGTCGAAGCGTTAATTGCAAGTATTGCAAAAAGACCTTCAACTCGCCCTACGCTTACTACAAACATTGCATAACCATCAACCACGAGAAATTCAGTCCGGAAATAAGCGACATCGTTTGCGAAAAATGCGGGAAACACTTTGTGAAACGTTATGACTTGAGACAACACATGTACCGCGTCCACAACATATCGAAACAGTTCTTTTCCTGTGACCATTGCGATTACAAAACCGTCCACAAGTGCAACATGGACAGACATGTCGCTTTGCATTTCCGGAAGAACAATCAGTACACTTGCGAGTATTGCGGAAAGAGCTGTGACAGCATCGCTAATCTCAACGACCACATCACCTACAACCACATCCAGACAAAACAGTTCAGATGTGACAAGTGCGACAAGTCGTTCAAGAGAAATTCAGAACTGGTGCGACACCAAGACAGTCATTCTGACGTGAGGCCGCACGTTTGCACCGTCTGTGGTAAGACGTACAAGAGATTGAATCATTTGAAGAGGCACGAGCATCGGGTCCATCAGATTGTCAAAGAAACCAGAAGAATAAAGAAGGTTTTGATTGGTGGAGAAGAGTGCGAGGAGCAGAAAGAAGCAGACGCACAGTCAAGCTCTAAGATGGTGTTTTTGCAGTCGCAAGTTGGCGACCCTAAGTGTACTCTGGTGAAGGAGCAAGAACAGGTCCTGTTGAATTTTTCTGGGACGGCGGAGATTAACAGTCTCGACCAGATCACTTATCTGTTGCCGGAGAGGGGTTGGGGTATCGATAATGATGATTTCTACAGGGTGTACAATGTTCCATTGAATTACGGCGGTCAGGATGGAAGTTTAACAAATAGTGAAAATATTCCCAGTGAGCAATGA
- Protein Sequence
- MRHVRITGQNIKKLTSFKNQIGDILKELNKFDENDKTEAMSYIRNYISNDSNVACSSDSSKATRRKGTSAEKTNKYCKVQKKRYNLRCDKNRKIKYSDGNTVSLKKIIFKCKVCNASEKTKKLMLKHVQTHVGAPRSCIKCKRTFNGSVPFKWHQSNYCHPSFYDKWKFKCNLCPREFVSKRTLESHLQGHKRNNCSYCDKVLTRRVQLIRHLLEVHAIKLERDTYKCDHCEKRYIKKCSLFYHLRQHLPDKCVCLECGQISDSIEEYEAHKKQHDLQKHFNCSKCGDKFSRRQQYLYHLKRHNQYRCVTCNESYASRVKAIKHKQQGHQVEGLNPRFICPHCPIAFHRESRFHIHMRKHTEESRSVNCKYCKKTFNSPYAYYKHCITINHEKFSPEISDIVCEKCGKHFVKRYDLRQHMYRVHNISKQFFSCDHCDYKTVHKCNMDRHVALHFRKNNQYTCEYCGKSCDSIANLNDHITYNHIQTKQFRCDKCDKSFKRNSELVRHQDSHSDVRPHVCTVCGKTYKRLNHLKRHEHRVHQIVKETRRIKKVLIGGEECEEQKEADAQSSSKMVFLQSQVGDPKCTLVKEQEQVLLNFSGTAEINSLDQITYLLPERGWGIDNDDFYRVYNVPLNYGGQDGSLTNSENIPSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -