Tmol010720.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014541.1:5583036-5584419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.019 16.0 1.9 1 23 111 134 111 134 0.96 2 11 0.00044 0.038 15.1 0.0 3 20 145 162 144 164 0.94 3 11 9.9e-06 0.00085 20.2 0.1 3 23 183 204 182 204 0.96 4 11 4.6e-06 0.00039 21.3 0.7 1 23 210 232 210 232 0.98 5 11 0.00015 0.013 16.5 1.8 1 23 238 260 238 260 0.96 6 11 0.00011 0.0097 16.9 0.8 1 20 266 285 266 286 0.96 7 11 0.00027 0.023 15.7 2.4 1 23 297 319 297 319 0.99 8 11 0.0011 0.095 13.8 4.3 1 23 325 347 325 347 0.95 9 11 0.0048 0.41 11.8 0.7 1 23 353 376 353 376 0.96 10 11 0.0011 0.096 13.8 1.4 1 23 390 412 390 412 0.97 11 11 7.3e-06 0.00062 20.7 2.1 1 23 418 441 418 441 0.98
Sequence Information
- Coding Sequence
- ATGTCGAATTTGTGCATCGTTTGTTTGAATGAGGatgcaaatttgaaaaacctGAGCGAAATCGACGAACACGACGTCAGAATCGTGATAAAGTTGCGGAAATGTGTACCGGAAGTGGAGTGGAAAATCGATTACGAGATATGCGTCACGTGCGTGGAACACCTGGAAAACGTGTGTGCCTTCCGCGACATGTGCATCAGGTCGTACTTGGCCCGGAAGGGAGGTGAGAAGCCGGCCGAGCTGGCCGAAGACAAAACCCTTTCGAACAACGACAGCGACGAGCGCAAGAGTGACAGCGACGACGAGAAGGTCGAGAGCGTAGAGTCGAATTTCGTGTGCTTCCACTGCGAGAAGAACTTCAAGGTGAAAAGTGTCCTGGAGGACCACATCAAGTACGAACACACGAGCAAGAAGAGCAGGAAGAATCGCGCGTGCGACCTGTGCGGCAAGGCGTACGCGTCCGAGAGCGCGTTGAAAAAACACAAGACGGTCTGCGGTAAGACCGAGAGCGACGTGAAAGAGGCGGAGGCCAAGCCGTACAACATCTGCGACGTGTGCGGCGCGTCGTTCGGCAACAAGTATCTCTTGAAGCGGCACATAAAGAACGTGCACGCCACCGAGAAAAAGTTCAAGTGCGAGCTTTGCGACAGGAAGTTCGCGTCGCCCGTTTATCTGAACGCGCACAAGCGCTACCACACTGGGGAGAGAAAGCACATCTGTTCGTTCTGCGGCAAAGGTTACATAACCGCCAGCGACCTGTACCACCACGAGAAGATTCACGCCAACAAGAGGGCCTACCGGTGCCAGGCGTGCCCCAAAGCGTTCAACACGTCGTCGGATTTGCACAAGCACAAAATCTGCGTGCACCTGGACCGGTCCCAGTGGAAGTACGAGTGCAGCTTTTGCCAGAGGAGGTTCCCGCTCAAGACCAACCTGGACACCCACACCAAGACCCACACGGGGGAACGGAACTTCTTGTGTCACCTGTGCGACAGGAAGTGCATCAACAGGTCGGTCCTGAAGAGACACATAGAGAGTCACTCGGTGGTGAAGTCGTTCAAGTGCAACTTGTGCCTACAGGGGTACAAGTACCAGAAGAGTTTGGACATTCACATGGTGAAGGCGCACGGGATCGGCGACGCGAAGATCCCCGAGAGGGTGAAGAAGTTCTTCTGCAGCGCGTGCCCCAAGAGCTATTTCGCCAACAACAAGTTGCAAAAACACATAAGGTCGCATACGGGAGAGAGGCCGTTCAGGTGTCCCGCTTGCGACAAATGTTTCATAGACAAGTCGTACATCAAACAGCATTTAAAGACTGCACACaacgtgttttaa
- Protein Sequence
- MSNLCIVCLNEDANLKNLSEIDEHDVRIVIKLRKCVPEVEWKIDYEICVTCVEHLENVCAFRDMCIRSYLARKGGEKPAELAEDKTLSNNDSDERKSDSDDEKVESVESNFVCFHCEKNFKVKSVLEDHIKYEHTSKKSRKNRACDLCGKAYASESALKKHKTVCGKTESDVKEAEAKPYNICDVCGASFGNKYLLKRHIKNVHATEKKFKCELCDRKFASPVYLNAHKRYHTGERKHICSFCGKGYITASDLYHHEKIHANKRAYRCQACPKAFNTSSDLHKHKICVHLDRSQWKYECSFCQRRFPLKTNLDTHTKTHTGERNFLCHLCDRKCINRSVLKRHIESHSVVKSFKCNLCLQGYKYQKSLDIHMVKAHGIGDAKIPERVKKFFCSACPKSYFANNKLQKHIRSHTGERPFRCPACDKCFIDKSYIKQHLKTAHNVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00167811;
- 90% Identity
- -
- 80% Identity
- -