Tmol008543.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014540.1:17168522-17176607[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00063 0.054 14.6 0.8 2 23 170 192 170 192 0.97 2 21 2 1.7e+02 3.6 2.6 1 21 312 332 312 333 0.92 3 21 2.9 2.5e+02 3.0 5.3 1 23 362 385 362 385 0.91 4 21 0.53 45 5.4 0.3 5 20 395 410 392 412 0.91 5 21 0.072 6.1 8.1 0.2 1 23 418 441 418 441 0.90 6 21 3.2e-05 0.0027 18.7 0.9 2 23 517 538 516 538 0.97 7 21 0.14 12 7.2 0.7 1 22 552 572 552 573 0.75 8 21 0.00025 0.021 15.8 0.7 2 23 577 598 576 598 0.97 9 21 7.3e-06 0.00062 20.7 0.6 2 23 629 650 628 650 0.97 10 21 0.076 6.5 8.0 2.9 1 23 673 696 673 696 0.96 11 21 0.00082 0.07 14.2 1.1 2 23 710 731 709 731 0.97 12 21 1.1e-05 0.00091 20.2 6.5 1 23 765 787 765 787 0.98 13 21 0.055 4.7 8.5 1.1 3 23 808 829 808 829 0.90 14 21 0.00017 0.014 16.4 1.3 1 23 854 876 854 876 0.98 15 21 5.8e-05 0.005 17.8 0.5 2 23 892 914 891 914 0.94 16 21 1.4e-05 0.0012 19.8 0.1 1 23 930 952 930 952 0.94 17 21 0.052 4.4 8.5 0.1 1 23 980 1003 980 1003 0.95 18 21 0.13 11 7.3 1.0 2 23 1014 1035 1014 1035 0.96 19 21 0.00051 0.044 14.9 0.5 3 23 1049 1070 1047 1070 0.96 20 21 2.4e-05 0.0021 19.0 2.1 1 23 1076 1098 1076 1098 0.99 21 21 0.00039 0.033 15.2 0.2 1 23 1116 1139 1116 1139 0.94
Sequence Information
- Coding Sequence
- ATGGCTGATTCGAGGTTGGCAAACTTTAATGCGTGCTGCAGACTGTGTTTGTCCGACACTTTGGACAATCTAAAGTCGATTTTTGATGAAAGTGTAGACGATCGAGGGTTACAACAGAAGATTTCGACTTCTTTAGGAGTCGAGATAATGGCTGACGATAAACTATCGACCATGGTTTGCCTCCAATGTGttgaaaaagtaaacaacTGGCAGTCTTTCAAGCTTACTTGTTGCGAAAACCAGACCAAACTGGAACAGTGGATGAATATCTCAAGTGCAGATTTATCCGATATGAATATTCAAATCAAAGAGGAACCTATCGATCACGAGGCACTAGCACCAGATGTGGTGATTAATGGAGACGTTCCCGTGAAAAACGAGCCAGTGGAAGAAGAGTACAACGAACTTCCGCCGCCGTTGACTCCACAAGGTCCGGAAGATGGTGACGTGGAGGTCCTTCCACATTCTCCTTCCTCACAGCTTAACGATGAGGAAGGTCATCCCCGAAAATGTAGCTTTTGCGGAAAATTATTCAGTTCGGCAGGAAATCGCAGGAAACATGAGAGAGTAATACACGGTATGAAATCGTACGGTTCCACTACCGAGTCAGACGTTGGTTCACTCACTCAAGACGAAAGGTCGCAGAGTTCCATGGACTCGCGGAGTCAAAACGAATCGACGTCCGAAACAAAGGAACCCACCacagaagaaaagaaaattttgtttgcagCTGGTTTAAAGTTATTGCAACGAAATTCAACGCCTCCGATCTCGTCGGAAAATTTGTCCAGAATAGAAAACAGTTACATTGAAAAGTGTAAAGCGATGGTCACCATGTACAGTTCACTTCGATGTGCATGTCACAACGTCACCCACCCTAATTTGAAAGGTTTATTGTCTCATCTACGATCTTTACGGATTTGGTTTCCGGTATTTACTTGTTACCACTGCATGATCACCTTCACTGACAGATCAACAAGTACGAAACATTATCTGAGGTGTCCCAAGTCCAATTTAGAAAGTCTGATTAAATTGTCGAATTTGAAGAAGCGGAGCAAGGTAAAAACTCGTCTTTATCAAAACTACAAATGCACTCAGTGTAGGTTCATGTATACGTTCCACGAAGACTTTTGTATGCACGTTGATGAGGATCACAGCCAAGTCGAGATGCCGCACAGATGTACATGTGGCAGAGTATTCAATTCGTTGGAAGAATACACAGATCACACTTACATTAGTTGTATGGTGGAATTTTACTGTGATATTTGTTTTGTCACACTTAAAACTTTGGATGCTTTCCAAAAACATGCAGCTGAACTTCACGATAACTCCGAAGGTTTTGTTCTTTTGCAAGATGATAATTACAAACAAAGGAGATTGGTTTCACCTACGACACGCACTAGACAAAGCGTTAAGCGGGAGCATGCTGACGAAAGCAATATCATCAGCGGAAAAAGAAGAAGTTCGTACAAAGCGTCAATTGTAGAACCCGAAGAGGAAGACGGAAAAGTAATAAATCCGTTGTACATGCAGAAGATTCCGGGAACTACTTGTCCCATTTGTTCTAAAGaatattcaaataataataatatgtggAGACATTATAAGATGCATCTGCAAGAAAATCGAGACGAACAGTTCGACGATTCCATATATTGTTGTCCTGACTGCGGAGGCATGTTTAGCACAGCCGAATGGGAAAAACATAAAGGAATGCATAAGAAAAAGACTTGCAATGAGTGCGGAAAAATTTTCCAGTTTCAGTCGGAGTTGGACCAACACAGAAGTGTACATCTGAATCTTAAGGTGTACAGAGATTCGAAAACGCAGTCGTACAAGAGTACAATGGTCAGCCCGAACGGTGAAGGAAGCAACATAGTTGTAATGTGCGAAATTTGCGACAGAATGTTCACATCGAAAGAGCAATTGAAAGAACACAAACTGACACACGAAGCAATGCCAGTTCTAGAATCTGCAGAAGCTACTGAACCAGAGggagaaaataaaactaaaaagtTCTGTTGTAAACTCTGCAACAAACAATATTCGGGTTACGGGGGTTTGTGGGATCATAACAGGAAGAAACATCCTGAAAATAAGTCGCCTCACAGCGGAGATTTTCCAAAGCAATGCAAATATTGTGACAAAGTCTTTGTTACCGGTGGTTCGTACTTTATGCACAAACAGATGCACGAAAGAAACAATCAGTTGGCACCAAAGAAGCAAGTGGAACCTCCGCAACTTCAAGGCTCCACTGAGGAAGAAAACAACGAAGACGATTCAGAGTCTTATCACACGTGCAAACGGTGTTTCAAGGTTTTCTCAAATAGGTACAATCTCAAAAACCACATGAAGAGTCACGGGGTGTATAACACAAGTCCGACTACTaagagtgccaaaaaaagtacAAAGAAAGTGTGGTGTGATATATGTCATTGTGCATTTGAAAATATAGCGAGTTTGGAAAGACATAAAGCTGATGGTCATACTGAAAATGACGACACCATGCCGAACCTATCTGATGAACAGAGTGAAGGTGATCTTAAAGCACCATTTGTTTTTACCTGTGACGTATGTGTACAAACATTCACAACCAAAATCGCTTTGAAAAAACATAAGGAAAAACACGCGAGAGAAGTGAGACCAATTATCAAAAACAAGCAGAACATGGTGTATTGCAAGTAttgcaaaatttcatttgcTAACCCGTTCCAATTATCCAATCATATGAAAGACGAGCACATGGAAGAATTCAAGCCGCACCAAAAGAAAGACAAATCTAAAAGTTTTGCTTGTTCGTTGTGTGGCAAGGCGTTCAGTTCTAGTTCGGCCTTATATGCCCATCAAGGTTGGCATAAACGCGGCAAGCTCGAGAGTGTGAAACGTAAGGAAGAGTCTTTACTTAAGATTAAAGAAGAACCCCAGGATCATTTCCAGTATCAGTGTCCAACTTGTCACGCGATTCTACCGAACGACACCGCTTTACAAATCCATATTCTTGAGAAGCATAGAAATGTTAACGCGACTGTTCTGCCGGCACGCTGTACTATGTGCAATTTAGATTTTGGTTCTCAGGAAGAGTACGACCAACACAAACGATTCCACGCCATGGTTGAGAAACAGCCGAAAAATAAGACTTTTGGATGCAGTCAGTGTCCAGCCGCTTTCAGTAGGATGGAGATGTTAAAAACACACATGAGACAATTTCATAGGGAACATAAGGAGTACAGATGTCACTACTGCAATCGCGTTTTTGAAAAAGCCAATTCTTTGAGTATTCATTTGAAAGTtcacgaaaaacaaaagatgattACCGCTGCAAAAGCGTCGTCGGGGTCcaaatcattttattgttCAATTTGTAACAAAGGATTTGACTTGCCGAAGGATTTGAGGGCTCACACAATACAAGCACATCCATTCTGA
- Protein Sequence
- MADSRLANFNACCRLCLSDTLDNLKSIFDESVDDRGLQQKISTSLGVEIMADDKLSTMVCLQCVEKVNNWQSFKLTCCENQTKLEQWMNISSADLSDMNIQIKEEPIDHEALAPDVVINGDVPVKNEPVEEEYNELPPPLTPQGPEDGDVEVLPHSPSSQLNDEEGHPRKCSFCGKLFSSAGNRRKHERVIHGMKSYGSTTESDVGSLTQDERSQSSMDSRSQNESTSETKEPTTEEKKILFAAGLKLLQRNSTPPISSENLSRIENSYIEKCKAMVTMYSSLRCACHNVTHPNLKGLLSHLRSLRIWFPVFTCYHCMITFTDRSTSTKHYLRCPKSNLESLIKLSNLKKRSKVKTRLYQNYKCTQCRFMYTFHEDFCMHVDEDHSQVEMPHRCTCGRVFNSLEEYTDHTYISCMVEFYCDICFVTLKTLDAFQKHAAELHDNSEGFVLLQDDNYKQRRLVSPTTRTRQSVKREHADESNIISGKRRSSYKASIVEPEEEDGKVINPLYMQKIPGTTCPICSKEYSNNNNMWRHYKMHLQENRDEQFDDSIYCCPDCGGMFSTAEWEKHKGMHKKKTCNECGKIFQFQSELDQHRSVHLNLKVYRDSKTQSYKSTMVSPNGEGSNIVVMCEICDRMFTSKEQLKEHKLTHEAMPVLESAEATEPEGENKTKKFCCKLCNKQYSGYGGLWDHNRKKHPENKSPHSGDFPKQCKYCDKVFVTGGSYFMHKQMHERNNQLAPKKQVEPPQLQGSTEEENNEDDSESYHTCKRCFKVFSNRYNLKNHMKSHGVYNTSPTTKSAKKSTKKVWCDICHCAFENIASLERHKADGHTENDDTMPNLSDEQSEGDLKAPFVFTCDVCVQTFTTKIALKKHKEKHAREVRPIIKNKQNMVYCKYCKISFANPFQLSNHMKDEHMEEFKPHQKKDKSKSFACSLCGKAFSSSSALYAHQGWHKRGKLESVKRKEESLLKIKEEPQDHFQYQCPTCHAILPNDTALQIHILEKHRNVNATVLPARCTMCNLDFGSQEEYDQHKRFHAMVEKQPKNKTFGCSQCPAAFSRMEMLKTHMRQFHREHKEYRCHYCNRVFEKANSLSIHLKVHEKQKMITAAKASSGSKSFYCSICNKGFDLPKDLRAHTIQAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -