Tmol001176.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014538.1:849485-851899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.9 5.9e+02 1.9 0.0 7 20 30 43 30 43 0.93 2 15 4.1e-07 3.5e-05 24.6 0.4 3 23 130 150 129 150 0.99 3 15 3.2e-06 0.00028 21.8 0.5 1 23 156 178 156 178 0.98 4 15 1.2e-06 0.0001 23.1 0.4 1 23 184 206 184 206 0.98 5 15 2.4e-05 0.002 19.1 1.5 2 23 256 277 255 277 0.97 6 15 0.029 2.5 9.3 0.2 1 23 297 319 297 319 0.98 7 15 0.0011 0.095 13.8 0.4 1 23 323 345 323 345 0.98 8 15 0.0068 0.58 11.3 0.4 1 23 351 374 351 374 0.96 9 15 0.0057 0.49 11.6 0.3 1 19 380 398 380 402 0.92 10 15 0.00088 0.075 14.1 0.7 1 23 408 431 408 431 0.95 11 15 0.00015 0.013 16.6 1.0 2 23 443 465 442 465 0.94 12 15 1.9e-05 0.0016 19.4 1.4 3 23 478 498 476 498 0.96 13 15 1.1e-05 0.00093 20.1 1.4 1 23 504 526 504 526 0.98 14 15 1.1e-06 9e-05 23.3 1.2 1 23 532 554 532 554 0.99 15 15 0.004 0.34 12.0 0.4 1 19 560 578 560 581 0.96
Sequence Information
- Coding Sequence
- ATGATCGAACTAGTATCTTACGCGCAGGGGTTAGTATTTACTTCTTCCTCTTGTTTACACTGTCGACTAACGGTGAAACATTTGTGGGGCAAAGGGTTCGCTCAACAGAACAAATTGAGGATACATTACTGGGTGAAGCCCTACACTTGCAGCTGCTGCGCCAAAAGCTTCACCAAGAAGCTCGTGCTGAAAGGGACATTTTTCAGGGGGCCCAAGACTGAAATCAAAAAAGAAGTTGACAGTGATTTGTCACGTGGTGATGATGATTCGAACGAAGAACAGAGAGGAGTGACCGACAGTGATTTCATACCTAGCAACGGGAATTCGACCGACGAAGGCAGAGTTAGACGGAAACGTAAAAAGAAACCCCGAACGGACAAAGTTCTGTGCGACATCTGCGGCAAGGGTTTCACCAGCAGTGACAACTTTTTACGTCACCTCAGAATTCACGCGGGATACAAACCCTACACTTGTTACGTGTGCGGGAAGAGTTTCACCGTCAAGGGTATGTTGAGTCAACACGAGAGGATCCACACTGGCGATAAACGCTACGTGTGTGACGTCTGCGGCAAGAAATTCACGCAGAGGTCGCCGCTTGTCATCCATAAGAGGAGTCACTCCGGTGAAAAACCCTATTCgcGACTGCGCCCCAAACGCAAAAACAGCGACGTAGACTATTCCCCCAATTGTCATAATTTGTCGAGCGGAGACGAAACTCCCAAAACTCGTCGTCTGAAGCGCAACTACAACGCCAACAAAACTTGGCCTTGTAAGAAGTGCGACCAAACTTTCGAGACCCTCCGGTTGCTGCGCCAACACCGCAAGACTCACACCGTGGAGGACATCACCGAACAGCACACTTACAAATTCGACGAAGTCCAGgaaatatatatttgtaacacTTGTTCGGCGGAGTACCAAGAGCGCGAAGAGATCGAGAAGCACATCAAGACTCACGAAGAGATGTTCGAGTGTTCCGTTTGTCAAGAAAAATTCCAAAAGGCGTACAACTACGGGACCCACATGGCGATACACAGCGACGACAAGTTGTTCAGGTGCCCCCAGTGCTCTTACAAGACCCCGAAGCGCACCGGCCTCCTCATCCACATCAACTACGTCCACTTGAGGAAGTTTTATTACGTCTGCACCACGTGCGGGAAGGGATTCAACGATGTCGTTTTGTTCAAAGAGCACGATAACGAGCACCAAGGGGTGCGTCCGTTCGTTTGTGTGGTTTGCAACAAAGATTTCGCCTACTCCAGGTACCTGTTGACCCACCAGGTGCGCTACCACAGGGTGGGAATCGAAGGCAAATTGTTGCCGAATCAGTGCAACGTGTGCAACAAGGTATTCAGCAAGGTGGCGACGTTGGAGAGGCACTTCAAGGAGAAGCACAGCGTGGCCAAGCTGCCCCACGAGAAGAAGCATTTGTGCGACTTGTGCGGCAAAGGGTTCGCTCAGAAGAACAAATTGAGGATACATTACAGGGTTCACACGGGGGTGAAGCCGTACACTTGCAGCTACTGCGCCAAAAGCTTCACCAAGAAGGATTACTTGGTGATGCACGAGAGGGTGCACAGCGGCGAAAAACCCTACTCGTGCGAGTATTGCGGCAAGTGTTTCAGCCAGGGGGCGCCGCTGAGGATTCATCTGAGGACGCACACGGGGGAGAGGCCCTACGTGTGCCAGTTTTGCGGGGCGGGGTTCACCTCGAGGGGGGCGTTAAATATTCATTGTAAGAGTTGTACAGGGCGGGCTTGA
- Protein Sequence
- MIELVSYAQGLVFTSSSCLHCRLTVKHLWGKGFAQQNKLRIHYWVKPYTCSCCAKSFTKKLVLKGTFFRGPKTEIKKEVDSDLSRGDDDSNEEQRGVTDSDFIPSNGNSTDEGRVRRKRKKKPRTDKVLCDICGKGFTSSDNFLRHLRIHAGYKPYTCYVCGKSFTVKGMLSQHERIHTGDKRYVCDVCGKKFTQRSPLVIHKRSHSGEKPYSRLRPKRKNSDVDYSPNCHNLSSGDETPKTRRLKRNYNANKTWPCKKCDQTFETLRLLRQHRKTHTVEDITEQHTYKFDEVQEIYICNTCSAEYQEREEIEKHIKTHEEMFECSVCQEKFQKAYNYGTHMAIHSDDKLFRCPQCSYKTPKRTGLLIHINYVHLRKFYYVCTTCGKGFNDVVLFKEHDNEHQGVRPFVCVVCNKDFAYSRYLLTHQVRYHRVGIEGKLLPNQCNVCNKVFSKVATLERHFKEKHSVAKLPHEKKHLCDLCGKGFAQKNKLRIHYRVHTGVKPYTCSYCAKSFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRTHTGERPYVCQFCGAGFTSRGALNIHCKSCTGRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -