Tmol015673.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014543.1:743337-744751[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00014 0.012 16.7 1.5 1 22 63 84 63 84 0.95 2 12 9.5e-06 0.00081 20.3 2.6 1 23 91 113 91 113 0.97 3 12 3.5e-08 3e-06 28.0 1.5 1 23 119 141 119 141 0.99 4 12 8.3e-06 0.0007 20.5 2.3 1 23 147 169 147 169 0.98 5 12 0.00079 0.067 14.3 2.6 3 23 177 197 175 197 0.98 6 12 0.015 1.3 10.2 1.6 2 20 208 226 207 229 0.95 7 12 6.4e-05 0.0055 17.7 3.1 1 23 236 258 236 258 0.98 8 12 2.6e-07 2.2e-05 25.2 1.9 1 23 264 286 264 286 0.99 9 12 1.2e-06 0.0001 23.1 0.8 1 23 292 314 292 314 0.99 10 12 1.3e-06 0.00011 23.0 1.5 1 23 320 342 320 342 0.98 11 12 4.1e-06 0.00035 21.5 1.6 1 23 348 370 348 370 0.99 12 12 2.8e-05 0.0024 18.8 1.0 3 23 378 399 376 399 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTGAAATCACAAGAAACGCTGCCCCTGGATTCCGTAGTGATCAAAAAAGAATGCGAAGACATTCTCAATACGGAATCTCAATTTCTCTTGAGCTTCAAGCAGGAGAAATCCGATTTTTGCGAGGACAAACCCGCGGTGAAGGGCGAAAACGAGGACTTGCTGAACGATGAGCAACGCAAACATCGGTGTAAAGTGTGCAAGAGGGCCTTCAGGAGTGAGGACGATCTGCACGACCATCTCAACACCAAACTCGCCGAGCGATCGTACGCTTGTTGCGCTTGTGGTAAGACATTCAGAGACAACACTCAGTTGAACGTACACACGCGTAAACACACCGGGGAAAAACCGTACGAGTGTAAACAATgtggcaaaaaattttcgattaaCGGTAATTTAAGTAAACACATGAGGACCCACACGGGCGAGCGGCGATTCGAGTGCGACACTTGCGAGCGGAAATTCACGCAATTTGCACATTTAGAAGACCACATAAAGACACATTCAGGTGATAGACCGTTTGGGTGCGAGATCTGCAAGAGCTCGTTCAAAACCAAGGCCAGGTTGAGGAAGCACAAGAAGTCCCACGAAGAGACGACGATGACGAAGAGGTCGGTCCAGTGCCCCATCTGTTCGAAAATGATGAAGACGATGAGACAGTTGACGAATCACATGGACTGTCACGCGTCCGAGAAGGATTTATTTCGGTGTGACGTCTGCGGAAAAGGCTATCACAATTTGTTTTACTTGCAGAACCACCAAAAGTCGCACAGCGGGATCAGGCCCTTCAAATGCAGTCTGTGCGAGAAGACGTTCATCACGTCGGCACAACTTAAAAGGCACCAAAATTCCCACACAGGTTACAAGCCCTACACGTGCGACTTGTGCCCCAAGTCGTTTCCCAACGTTCAGAATCTGAGGCGGCACAAGTTGACCCACACGGGCGAGAAAAACCACTCGTGCACCATTTGTGGGCGGAGCTTCATGATAGTCGAGAACTTGACGCGTCACATGCGGACTCACACAGGGGAGAAACCGTATCCCTGCGATATTTGCGGGCGACGGTTCGCCCACAGTACCACGGTAAAAGAGCACAGGAGGACCCACACTGGCGACAAACCCTTCGGATGCGGCATTTGTGATAAGAGATTCACCATTAACAAGTTATTGTACAAACACATCAGGACGAAACATCCAGAAGACTTCAACGCTTTCAAAGAAATGAACATAAGGAAGAAATacgattttaaatttcaaaacggAGAAGTTaaatccaatttttttcagataAACGGCAACGTAAAAGCCGAACCGAGTCTTGCCCTaatcaaaattgaaaagtttgaaaCCGAAGAAAACGCGTAA
- Protein Sequence
- MSVKSQETLPLDSVVIKKECEDILNTESQFLLSFKQEKSDFCEDKPAVKGENEDLLNDEQRKHRCKVCKRAFRSEDDLHDHLNTKLAERSYACCACGKTFRDNTQLNVHTRKHTGEKPYECKQCGKKFSINGNLSKHMRTHTGERRFECDTCERKFTQFAHLEDHIKTHSGDRPFGCEICKSSFKTKARLRKHKKSHEETTMTKRSVQCPICSKMMKTMRQLTNHMDCHASEKDLFRCDVCGKGYHNLFYLQNHQKSHSGIRPFKCSLCEKTFITSAQLKRHQNSHTGYKPYTCDLCPKSFPNVQNLRRHKLTHTGEKNHSCTICGRSFMIVENLTRHMRTHTGEKPYPCDICGRRFAHSTTVKEHRRTHTGDKPFGCGICDKRFTINKLLYKHIRTKHPEDFNAFKEMNIRKKYDFKFQNGEVKSNFFQINGNVKAEPSLALIKIEKFETEENA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00167793;
- 90% Identity
- -
- 80% Identity
- -