Tmol001161.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014538.1:808528-810719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.3e-05 0.0028 18.6 4.9 1 23 32 55 32 55 0.97 2 22 0.00049 0.042 14.9 0.6 1 23 60 82 60 82 0.97 3 22 0.011 0.97 10.6 2.7 1 19 88 106 88 111 0.94 4 22 0.043 3.7 8.8 2.6 2 14 120 132 119 143 0.81 5 22 0.00019 0.016 16.2 0.3 1 23 148 170 148 170 0.97 6 22 4.1e-05 0.0035 18.3 0.3 1 23 177 200 177 200 0.97 7 22 0.095 8.1 7.7 0.7 1 23 205 228 205 228 0.93 8 22 0.0002 0.017 16.1 0.3 1 23 243 265 243 265 0.96 9 22 2.3e-05 0.002 19.1 3.0 1 23 271 293 271 293 0.98 10 22 1.4e-06 0.00012 22.9 1.3 1 23 299 322 299 322 0.97 11 22 0.0005 0.042 14.9 2.4 1 23 328 350 328 350 0.95 12 22 0.0011 0.092 13.8 6.0 1 23 362 385 362 385 0.97 13 22 0.00013 0.011 16.8 0.3 1 23 391 413 391 413 0.97 14 22 0.0022 0.18 12.9 5.2 1 23 419 441 419 441 0.99 15 22 0.083 7.1 7.9 0.2 2 11 451 460 450 474 0.83 16 22 4 3.4e+02 2.6 2.3 2 23 480 501 480 501 0.87 17 22 0.0014 0.12 13.5 0.1 1 23 508 531 508 531 0.95 18 22 1.3e-05 0.0011 19.9 1.5 1 23 536 559 536 559 0.97 19 22 0.00086 0.074 14.1 0.1 2 23 569 591 568 591 0.91 20 22 7.4e-07 6.3e-05 23.8 0.8 1 23 596 618 596 618 0.98 21 22 0.00076 0.064 14.3 0.7 1 23 624 646 624 646 0.96 22 22 6.6e-05 0.0057 17.6 3.3 1 23 652 675 652 675 0.96
Sequence Information
- Coding Sequence
- ATGATGGTGTGTTCCAGGTGCGATCTGGACCTTGTTAAAATAGAAGAAACGACGAAGAAACTGAGCGACTTTGCTGCGATGCAGAAATACAAGCACAAGTGCAGCAAGTGTCAGATGACTTTTACGACTGAAAGCATGTTGCGTCAACACAGACGAAAAGTGCATCGAGCAAATCGCTTTCGGTGCGATCTGTGCGGCAAACTCTTCGCCGAGAGATACCAACTGTCGTACCACAGAGAGATCCACGGCAAAGAAAACCTGTACAAGTGCGACCTTTGCGAAAGGAGCTACAATTCGCACGCGAGTCTTTCCCACCACAAGTGGAGGATTCACAAAGTCGGGCCCGGCAATGATCTGGTGTGCCCCGATTgcggcaaagtttacaaatCTTCGTCCAGGACGAGGTACAAGGCTCACCTGAAGCAACATTCCTACGCGGGGTTTATTTGTGAAGTTTGCAACAAGAGTTTCATAGAGGAGAGATTGTTGAACGACCACAAGAAAGTACACATCGAGGTCAGAGAACCCTACTCGTGCGCGTCGTGCGACAAGAAGTTTGTAACATCTGGAGGATTGAAACAACACAGAATAACCATTCACGAAGGGAAGCGCTACTTGTGCGACGTCTGCAAGCGCGAGTTTAACTCGGTGGTGGGCATGAGGTACCACAAGAAAATCAAACATCGGGAGAGTTTGCAAGTGACCGAAGAACAATGCAAATCTCGATATTTGTGCGAGACTTGCGGTAAAGAATTGAGCTCGATTACGAGTCTGAGAGACCACATCAAGACTCACACCGGAGAAAAACCGTTCTCTTGCAGTTACTGCAAGAAGAGGTTCTCCAAAAGGGAGGGTTTGAAAATACACTTTCGAGTTCACACCAAAGAAAAACCGCACACATGCGAGATTTGCGGCAAGAAGTACACGCAGAGGAGTCCTCTGATGCTCCACATGAAAACCGCACACGGTGGAGAAAAATCTCACTCTTGCAGCATCTGCGCGAAGAGTTTCTTCACCAGGAGTCTACTGAATGTGCACTTCAAAGCGCATTCCCACAAATTCGCGGTCGAGACTCAACGTCTTCATCAGTGCAGAAAATGCAAACAAGCTTTTGTTTCGAAAGAACTGTTAAATCGCCACCGTCACACAACTCACAGGCAGAAAGATCGTTTCCCTTGTCAGTTTTGTCCGAAGACTTACGCCGATAACTTCAGCCTGAAAGTCCACGTCACGGTTCACTCCGAAGAGAAGTCGTACAAGTGTCAATCTTGCGACAATAGTTTCAAGTCCTACCGGAGTTTCTTGCGTCACAAGAAAACTCACTCTCCGTACATAATTCCCAGCTTGTTGATCTGTCCCGATTGCGGCAAGTCGTACAAAGAGATCTCGAGAACAGCCTACTATGCCCACCGCAAGCAACACACATCGGCAAAGGCGACTTGCGACGTCTGCCACAAAGCTGTCGCTCACTCGTTTCTAGACGCACACAAGAGAACGCAACACGGCAACCGCAGACCTACATACCCTTGCGATTCTTGCGACAAAGTTTTTATAATACGGAAAAGCTTGGCGACGCACGTCGAGTCGGTGCATCAAGGCCAGCACCATGTGTGCGACGTCTGTGGCTACTCTTTCAACTCTATGGCAAACTTGAGGGTCCACAAAAAGACCAAACATGACGCCGATTATGAAAAACCGAAGGTCTCGTGCGAATTGTGTGACAAAGTGTTTTCCTCATGGTCTGGTCGTAAGTATCACGTGGAGAACGTGCACAACGGTAAGCGCTTCGTGTGTGAGACGTGCGGGAAGGTCTTCACGTCTGCGTGTGGTCTGAAGAATCACATAAAGGTTCACACTGGAGAGAAACCGTTTGCTTGTGATTATTGCGACAAGAAATTCGCGAACAGTCAAGTGCGGAAGGAGCACTTGAAGGTGCACACGAAGGAGCAACCGCACGCGTGTAAACTTTGCGACAAGAAGTATTCGCAAAGGACGCCGCTGGTGCATCACATGAGGACGGCACACGGCGGGGACAAGCCTTAA
- Protein Sequence
- MMVCSRCDLDLVKIEETTKKLSDFAAMQKYKHKCSKCQMTFTTESMLRQHRRKVHRANRFRCDLCGKLFAERYQLSYHREIHGKENLYKCDLCERSYNSHASLSHHKWRIHKVGPGNDLVCPDCGKVYKSSSRTRYKAHLKQHSYAGFICEVCNKSFIEERLLNDHKKVHIEVREPYSCASCDKKFVTSGGLKQHRITIHEGKRYLCDVCKREFNSVVGMRYHKKIKHRESLQVTEEQCKSRYLCETCGKELSSITSLRDHIKTHTGEKPFSCSYCKKRFSKREGLKIHFRVHTKEKPHTCEICGKKYTQRSPLMLHMKTAHGGEKSHSCSICAKSFFTRSLLNVHFKAHSHKFAVETQRLHQCRKCKQAFVSKELLNRHRHTTHRQKDRFPCQFCPKTYADNFSLKVHVTVHSEEKSYKCQSCDNSFKSYRSFLRHKKTHSPYIIPSLLICPDCGKSYKEISRTAYYAHRKQHTSAKATCDVCHKAVAHSFLDAHKRTQHGNRRPTYPCDSCDKVFIIRKSLATHVESVHQGQHHVCDVCGYSFNSMANLRVHKKTKHDADYEKPKVSCELCDKVFSSWSGRKYHVENVHNGKRFVCETCGKVFTSACGLKNHIKVHTGEKPFACDYCDKKFANSQVRKEHLKVHTKEQPHACKLCDKKYSQRTPLVHHMRTAHGGDKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -