Tmol001163.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014538.1:812274-815037[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.1e-06 0.00035 21.4 6.1 1 23 73 95 73 96 0.95 2 24 0.0013 0.11 13.6 0.4 1 22 105 126 105 128 0.87 3 24 0.00029 0.025 15.6 0.9 3 23 135 156 134 156 0.98 4 24 1.4e-05 0.0012 19.8 0.3 2 23 164 186 163 186 0.96 5 24 4.2e-05 0.0036 18.3 1.0 3 23 193 213 191 213 0.96 6 24 0.00044 0.037 15.1 3.3 1 23 219 241 219 241 0.98 7 24 0.0063 0.54 11.4 0.5 1 22 247 268 247 270 0.89 8 24 2 1.7e+02 3.6 1.2 3 14 279 290 277 290 0.92 9 24 0.00028 0.024 15.7 2.5 2 23 335 357 334 357 0.95 10 24 1.5 1.3e+02 4.0 0.2 1 12 362 373 362 376 0.82 11 24 0.00049 0.042 14.9 0.7 2 23 387 409 386 409 0.97 12 24 0.0065 0.56 11.4 1.7 1 23 414 436 414 436 0.95 13 24 2e-05 0.0017 19.3 0.9 1 23 442 464 442 464 0.98 14 24 0.0037 0.32 12.1 0.0 1 23 470 493 470 493 0.93 15 24 0.36 31 5.9 0.1 1 13 499 511 499 512 0.89 16 24 2.4e-07 2e-05 25.4 0.8 2 23 532 554 532 554 0.97 17 24 0.0015 0.13 13.4 1.2 1 23 561 583 561 583 0.95 18 24 0.003 0.25 12.4 0.4 2 23 590 612 589 612 0.91 19 24 0.0022 0.19 12.8 8.9 1 23 617 639 617 639 0.99 20 24 5.4e-05 0.0046 17.9 0.3 1 23 648 670 648 670 0.99 21 24 1.2e-06 0.0001 23.1 1.3 1 23 675 697 675 697 0.98 22 24 1.2e-05 0.001 20.0 2.3 1 23 703 725 703 725 0.98 23 24 3.9e-07 3.3e-05 24.7 3.3 1 23 731 753 731 753 0.98 24 24 1.6e-05 0.0014 19.5 0.3 1 23 759 781 759 781 0.98
Sequence Information
- Coding Sequence
- ATGACACTAGACGACAAAAATTCCCTCTCAGACGACGACATTTCCACTTTTCGGACCTGCGTAATAGAGCGTCGAAGATGCAAAGTTTTAGTCAACTATAAAAACGGCTACATCGAGGAAAGCCTCGTTTGTCGTTATTGTGAGGAACTGTTCGATATCACTTCGGAAAAAGCCTACCTCAGCCACGTACGCAAGCACGAAAAAAGACACCAGTTGTTCATCTGCACCCACTGCCAAAAAACCTTCCGACAAGCGAAAAACTTGAAAGAGCACATCCAGAAACACCACGACGACAACGCCCACGCCCCCATGTTTCCGTGCCAACTGTGCGACAAGAAGTTCGCTTCGAAGAGCGGCCTCTACGGCCACAACGAAAACGTCCACAAGGGCACCCTCTCCTTGTGCGAATTTTGCGGCAAGAGCTTCGCCTGCCCGTCGAACTTGTTGGGGCACATCAGGACGCAACACCTCGACAAATCCATAAATCTGTCCTGCGAGCTGTGCGAGAAGGTTTTCTCGTCGAAGGGCGGTCTGAGGACGCACGTGAGGGTGTTCCACGAAGGAAAGCGTCACTTGTGCGACACTTGCGGCAAAGATCTCGCATCGTCGTCGAGTCTGCGGGTCCACTTGAGGACGCACACCGGAGAAAGACCCTTCGTTTGTAAATACTGCAAGAAGAGGTGCATCAGCAAGATGGCGTTGAGGATGCACGAGAGGGTCCACACCAAGGAGAAACCGCACGTTTGCGAGTTCTGCGGCAACAGATATTCGCAAAGAAGTCCCTTGAAGATGCACCTGGTGGCGGTGCACAGTGGAGGAGAGAGGCCCTTCGGTTGTTCCGTTTGTTCCAAGCGCTTCGTCAGCAAGTCGGTCCCACCGGTAGAAGAAACATCTGAATGTGTGGTCAGATCAAGTGAAGACACTTCGAGTTGCACCAAGACTTTACTCGAAGCTCTTCTGTTGAGACCACGCGAAGAAAAAACTGTCGAACAGAAGATCTTACACTGCGCGTTTTGCAATAAGAGCTACCAAAGCAAGCGAGCTTTGCGGAGACACATCCAAACCATTCACGAAGAAAGATATTACTTGTGCGAAGCGTGCGGTAAGCGGTTTAGCGAAGAGTCGACGCACAAAAGTTGTAAATACTCGGACAATTCGCGGTGCAAGATTTGCAACAAACTCATGGCCAATCCGACTTCTTTGAGAGTACACATGAGGACCCAGCACCAAGCTCGGCGGTTTTTGTGCGAAACGTGCGGTAAACTATTTCCGGAACTGAGACGAATGCGTCATCACATGAGGATTCACACCGGAGAGAAACCGTACTCTTGCGAGGAGTGCGGCAAGAAGTTCAGGTTTCGAACAGCCGTGACGTCGCACATGACGGTACACACGAAGCAAAGACGGTTCGTGTGCGAGCTTTGCGACAAGAATTACGCGCAGAGGATGGGCTTGATGATGCACGTACTGGCGGTGCACAGCGAAGAGCGACCTTTCGCTTGCAACATCTGTCCGTGGCGGTTCATATCGAAGGGGCGGTGCAGAAACACTCTGAAAGGGGTCCGTTTGAAGAAGCAGCGCGCTCCGCCTGAAACTTGCAACATTTGCGACAAACCGTTTAAAAACAGTGACGCTTTGAAACGCCACCTCCAAACCTCGCATTCCATCAACCCCCGGATTTTTTCGTGCGAGACTTGCGGCAAGCAGTTTCGCAAGAAGCAGTTACTGGGGTACCACGAAGCCCGCCACATAAAGAACTTCAAAGTGAAGTGCGATCAGTGCGACAAGGGTTTCTACACGATGGTCGAGTTCAAGAATCATTACGCGGCGCGCCACAAGGGAGTCAGATACGTTTGCAATCACTGCGACAAGTCGTTTTTGGACAAGCATTGCTTCAGACGCCACCTTCTCACGCACGAGAGCGGTTACGTGAAGCAGGAGTACAAGTGTGCGGAGTGCGACAGGGTGTACATGACGAAAGGGGGGTTGAACGTGCACAAGAAGATGCACCAGAATATAACGTACATGTGCGACATCTGCGGCAAGTCAGTGACGTCGAAGACGAGTCTGAATCATCACATGATGCTTCACAGCGGTGAGAAACCGTTCGTGTGCGAGACCTGCGGCAAGTGCTTCAACAAGAAGATGTTGCTACGGATACACGAGAGGATACACACGAAGGTGAAACCGTACAGTTGTGTACACTGCGACAAGAAGTTTTCACAGAGGAGTACTTTGACCGTTCACATCCGCTCCCACACAGGAGAGAGACCGTACGCGTGCTGGATCTGTCAGAAGGATTTTGTCACCAAGACTTTGCTAAAAGCGCACGCGAAAACTCATGGGACAGCTCTGATGAACATCTGA
- Protein Sequence
- MTLDDKNSLSDDDISTFRTCVIERRRCKVLVNYKNGYIEESLVCRYCEELFDITSEKAYLSHVRKHEKRHQLFICTHCQKTFRQAKNLKEHIQKHHDDNAHAPMFPCQLCDKKFASKSGLYGHNENVHKGTLSLCEFCGKSFACPSNLLGHIRTQHLDKSINLSCELCEKVFSSKGGLRTHVRVFHEGKRHLCDTCGKDLASSSSLRVHLRTHTGERPFVCKYCKKRCISKMALRMHERVHTKEKPHVCEFCGNRYSQRSPLKMHLVAVHSGGERPFGCSVCSKRFVSKSVPPVEETSECVVRSSEDTSSCTKTLLEALLLRPREEKTVEQKILHCAFCNKSYQSKRALRRHIQTIHEERYYLCEACGKRFSEESTHKSCKYSDNSRCKICNKLMANPTSLRVHMRTQHQARRFLCETCGKLFPELRRMRHHMRIHTGEKPYSCEECGKKFRFRTAVTSHMTVHTKQRRFVCELCDKNYAQRMGLMMHVLAVHSEERPFACNICPWRFISKGRCRNTLKGVRLKKQRAPPETCNICDKPFKNSDALKRHLQTSHSINPRIFSCETCGKQFRKKQLLGYHEARHIKNFKVKCDQCDKGFYTMVEFKNHYAARHKGVRYVCNHCDKSFLDKHCFRRHLLTHESGYVKQEYKCAECDRVYMTKGGLNVHKKMHQNITYMCDICGKSVTSKTSLNHHMMLHSGEKPFVCETCGKCFNKKMLLRIHERIHTKVKPYSCVHCDKKFSQRSTLTVHIRSHTGERPYACWICQKDFVTKTLLKAHAKTHGTALMNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -