Tuni038392.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax unifasciatus
Gene Symbol
lola
Assembly
GCA_030770225.1
Location
JASTWK010002487.1:303649-313379[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.023 3.7 9.4 0.4 1 23 25 49 25 49 0.97
2 16 0.0018 0.29 12.9 0.4 1 23 56 79 56 79 0.95
3 16 0.047 7.4 8.5 0.3 1 21 118 140 118 141 0.95
4 16 0.0075 1.2 11.0 4.9 1 21 149 169 149 172 0.96
5 16 0.15 23 6.9 0.1 1 21 211 233 211 234 0.95
6 16 0.019 3.1 9.7 5.4 1 21 242 262 242 265 0.96
7 16 0.067 11 8.0 0.4 1 21 304 326 304 327 0.94
8 16 0.00044 0.07 14.8 5.5 1 21 335 355 335 358 0.96
9 16 0.16 25 6.8 0.1 1 21 397 419 397 420 0.94
10 16 1.6 2.5e+02 3.7 7.6 1 21 428 448 428 451 0.95
11 16 0.22 36 6.3 0.2 2 21 515 536 514 537 0.90
12 16 2.4 3.7e+02 3.1 3.9 1 11 545 555 545 557 0.89
13 16 0.024 3.8 9.4 2.2 2 21 597 618 596 623 0.92
14 16 0.0025 0.4 12.5 1.3 1 23 627 650 627 650 0.96
15 16 0.0017 0.27 13.0 0.2 1 23 688 712 688 712 0.97
16 16 0.00038 0.06 15.0 2.4 1 23 719 742 719 742 0.96

Sequence Information

Coding Sequence
ATGGATAGCAAAAAACCCACGACCTATCTTCGCAAGAGGACTAAGAACAccaggaaaaaaaagagcgtCAAGTTTTCGTGTCCTAATCCAAATTGCCGGATAGTTTTTGGGTGGAAACAGAGTCTGCGGAGACATCTTCGCTACCATTGCGGCCAGAAGTTTAGGTTCAAGTGTCCCTACTGCGACTACATAAGCAAGGTCAAGGCCGACGTAAAAAATCACATTGGGCGCAAGCATAAGAACCGTTATATCTATGTCATCGATATTACGCGGAATGTTGTTTATAGCAAAAAACCCACGACCTATCTTCACAAGAGGACTAAGAAGATCAGGAAAAAGAGGTGCGTCAAGTTTTCATGTCCTAATCCGAATTGCCAGAGAACCTTCGGGTGGAAAGAGAGTCTGCGGAACCATCTTCGCTTTGAATGCGGCCAGAAGCCTAGGTTCAAGTGTCCTTACTGCGATTACGTATGCAAGATCAAGGGCAGCGTAACGAGGCACATTCGGTGCAAGCATAAGAATCGCTATGTCTATGGCATCGATATTGAGCGGAATGTTGTTTATAGCAAAAAACCCTCGACCTATCTTCACAAGAGGACTAAGAACACCAGGAAAAAGAAGAGCGTCAAGTTTTCGTGTCCTAATCCAAACTGCCGGATAGTCTTTGGGTGGAAAGAGAGCCTGCAGAGACATCTTCGCTACGAATGCGGCCAGAAGCCCAGGTTCAAGTGTCCTTACTGCGACTTTATATGCAAGTTAAATGCCAACGTAAAGAGACACATTCGGTGCAAGCATAAGAATCGCTATGTCTACGTCATCGATATTGAGCGGAATGTTGTTTATAACAAAGAATCGACGACCTATCTTCACAAGAGGACTAAGAAGACCAGGAAAAAGAGGTGCGTCAAGTTTCCGTGTCCTAATCCGAATTGCCAGAGCGTTTTTGGGTCGAAATACAGCTTGCAGTACCATTTTCGCTACGAATGCGGCCAGAAGCCTAGGTTCAAGTGTCCCTACTGCGACTACGTATGCAAGCGCAAGGCTAGCATAAAGAGGCACATTCGGTGCATGCATAAGAATCGCTATGTCTACGTCATCGATATTGAGCGGAATGTTGTTTataacaaaaaatcgacgACCTATCTTCACAAGAGGAGTAAGAAGACCAGGAAAAAGAGGTGCGTCAAGTTTCCGTGTCCTAATCCGAATTGCCAGAGCACCTTCGGGTGGAAGGACAATCTGCGGAACCATCTTCGCTACGAATGCGGCCAGAAGCCTAGGTTCAAGTGTCCCTATTGCGACTACATATGCAAGTGCAAGGCTAGCATAAGGAGGCACATTCGATGCATGCATAAGAATCGCTATGTCTATGTCATCGATATTAAGCAGAATGTTGTTTCGGCACAAACTCTGCCTTTTCACATAAGTCTCGACGAGTATCTCTGGAGCATTTTATCGCGAACGGGTCGTTATTTTTCAGGTAACAAAGATCCCACCACCAATCTTCGTAAGAGGACCAAGAAAATGAGGTGCGCCAAGCTTTCGTGTCCTAATCCGAATTGCCGGAGCGTTTTTGGGTTGAAACGCAACCTGCGTAGACATCTTCTCTACGAATGCGGACAGAAACCCAGGTTCAAGTGTCCCTACTGCGACTACGTTTGCAAGGTACGTCTCTGGACGAGAATCTCTGAAGCATTTTATTGCGAACaagacgtttttttttcagataacAAAGAACCCACGACCTCTCGTCGCAATAGGACCAAGAAAATGAAATGGGCTAAATTATCGTGTCCTAATCAGAATTGCCAAAACACCTTCGTGAGCGAGAGGAACCTACAGAACCATCTTCGCTATCAATGCCGCCACAAGCCCAGGTTCACGTGTCCCTACTGCGACTACACGCGCAAGTTCAAGACTTACATAAAGGAGCACATTCGTGCCGAGCATAAGAATTGTTCCGTCTATGTTATCGATATTGAGCGGAATGTCGTTTataacaAAGAACCCACGACCTATCTTCACAAGAAGATCAAGAACATGAGAATGAGATACGCCAAGTTTCCGTGTCCTAATCCGAATTGCCAGAGCGGCTTTGGGTTGAAAAGCAACCTGCAGACCCACATTCGTTACCACTGCGGCCAGAAGCCGAGGTTCAAGTGTCCCTACTGCGACTACATATGCAAGTTCAAGGCCGACGTAAAGAAACACATTCAAGCCAGGCATCAGAACTGCTATGTCTATGTCATCGATATTGAGCGGAATGTTGTTTGTTAG
Protein Sequence
MDSKKPTTYLRKRTKNTRKKKSVKFSCPNPNCRIVFGWKQSLRRHLRYHCGQKFRFKCPYCDYISKVKADVKNHIGRKHKNRYIYVIDITRNVVYSKKPTTYLHKRTKKIRKKRCVKFSCPNPNCQRTFGWKESLRNHLRFECGQKPRFKCPYCDYVCKIKGSVTRHIRCKHKNRYVYGIDIERNVVYSKKPSTYLHKRTKNTRKKKSVKFSCPNPNCRIVFGWKESLQRHLRYECGQKPRFKCPYCDFICKLNANVKRHIRCKHKNRYVYVIDIERNVVYNKESTTYLHKRTKKTRKKRCVKFPCPNPNCQSVFGSKYSLQYHFRYECGQKPRFKCPYCDYVCKRKASIKRHIRCMHKNRYVYVIDIERNVVYNKKSTTYLHKRSKKTRKKRCVKFPCPNPNCQSTFGWKDNLRNHLRYECGQKPRFKCPYCDYICKCKASIRRHIRCMHKNRYVYVIDIKQNVVSAQTLPFHISLDEYLWSILSRTGRYFSGNKDPTTNLRKRTKKMRCAKLSCPNPNCRSVFGLKRNLRRHLLYECGQKPRFKCPYCDYVCKVRLWTRISEAFYCEQDVFFSDNKEPTTSRRNRTKKMKWAKLSCPNQNCQNTFVSERNLQNHLRYQCRHKPRFTCPYCDYTRKFKTYIKEHIRAEHKNCSVYVIDIERNVVYNKEPTTYLHKKIKNMRMRYAKFPCPNPNCQSGFGLKSNLQTHIRYHCGQKPRFKCPYCDYICKFKADVKKHIQARHQNCYVYVIDIERNVVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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