Tuni006826.1
Basic Information
- Insect
- Temnothorax unifasciatus
- Gene Symbol
- -
- Assembly
- GCA_030770225.1
- Location
- JASTWK010000093.1:197266-201837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 2.6 9.9 2.7 1 23 45 67 45 67 0.99 2 13 0.00016 0.025 16.3 3.0 1 23 238 260 238 260 0.99 3 13 2.4e-07 3.8e-05 25.1 0.4 1 23 266 288 266 288 0.98 4 13 0.0058 0.92 11.3 1.9 1 23 313 336 313 336 0.96 5 13 0.022 3.6 9.5 0.6 1 23 342 366 342 366 0.96 6 13 7.9e-07 0.00013 23.5 0.8 1 23 371 393 371 393 0.98 7 13 0.027 4.3 9.2 5.0 1 23 405 429 405 429 0.90 8 13 0.0044 0.69 11.7 2.6 1 23 431 453 431 453 0.97 9 13 7.9e-06 0.0013 20.3 0.2 1 23 459 481 459 481 0.96 10 13 7e-06 0.0011 20.5 1.4 1 23 487 509 487 509 0.98 11 13 0.013 2.1 10.2 0.4 5 23 524 542 515 542 0.79 12 13 0.012 2 10.3 7.2 1 23 548 571 548 571 0.94 13 13 0.0033 0.52 12.1 1.8 2 19 574 591 573 594 0.94
Sequence Information
- Coding Sequence
- ATGGCGCAGTCTCTCCTCGACGCTCTGACAGaTGTCTCGCTGGACGGCTCCTCTGTGCAATCCTTGCTGGAGTCGCAAACCTTGATAGCTGAAGTCGAACAGTCAGCGATTGATCAAGATGAGGAAGACATATTCCAATGTGGCAAGTGCAAGAGCCAGTTTACGTCGCTCCAGATGTTCGTACTCCATAAGAGGACGCACCAGAAGACGCAGCAGCAAGTGGATTTGACTCAGTTCTTAACAAACGACGAGAGTCAGGTGATGCACGTGGAAGATGCCGCTCAAGATGAGTCGCAGTACAATTCGCAGGAAACCTTTCAGCTTGGAGAACCTATTATTCTCGAAGAAGCAGACATGCTATTTAGCGTGGACCAGGATGCTGCTAATTATTTCATGACAGACTCCACGTTCAGCGTGCCGATTATCTTGAGTACAGAGAGCCTGGACACTTTCGGTAACGCTGCTATCGAGGCGACGGAAGACTCGAGCGAGGTGCCGGCGATACATCTACAAAACGACATTAGCTCACAGGAGGACGCCTCCAGCCAGTCTGAACAACCTAGCGCCTCGTTGACGAACAACGAGCCATCCCTGGCGGAAAACGAGCCGCCTTTGGAGGACAACGAATCCTCTCTTGAGAACAACGAGACATCCCTCCAGGATTCACTCGGTGAATCAGAAAATGGCATTAGTCAGACGCAGAACTTAAAGTATAAGTGTGGTTATTGCAACAAGCAGTTTGCGAAAAAATTCTACTGGCAGCAGCACGAACGTTCTCACACTGGAGAAAAGCCTTATCAATGCGTGGTGTGTGGTCGTGCATTCGCGCAGAAGTCAAACGTGAAGAAGCATATGTCCTCACACAAAGTATGGCCCGGCACCGCCATTCATTCGTTACCACCAGagGCACCTCCGGATGGAAGTATCGATCGCACATACCATTGCCAATTCTGCAAAGAGACGTTTGACTCGTATAAAGCTCTGAAAGGCCACCTAATCGTCTCGCATTTGGCGCTGAAAGTGTACAAATGCGTGCAGAGCAGCTGCAGCATGATGTTTTCGGATCTGGAAGAGTTCCTGGAGCACACGCGCAGCCACAAGTGCTCGGAATACCGGTGCCACGTGTGCGGCGAAGTATTCAGCACCCTCTCGGATCTTGGTCGCCATCAGTACGTCCACTCCGTCCAGAAGCAGAAGACCACGGAGAAGTATTACTGCTGCTCGACTTGCAAATCATCGTTCTCGAATCTGGAGGCATTGCAGCACCATAAAGAAACCACCACGCACAATTACGCGTGCCTGCACTGCGGCAAGAGCTTTCTCATTGAGAGATTTCTGCGCCGCCATCTCAAGACTCATTCGGCATCAGCAAGATTCGCCTGCGAGGATTGTGGCAAAGCTTTTAAAACCGAGCAGTACCTGGCCAATCATAAGCTGATACACAGCGAGGAGACGCCTTTTACATGTCCGcATTGCCCAGCCAGATTCAAGCGGAAAGATCGACTGGGCCGGCACATGCTGATTCACGATCTGACAAAAAGGCTCAAGTGCCCATTTCGCAACTATCTGGGCTGCATGAGTGAGTTTTCACGGCCCGATAAACTCAAACGACACTTGCTGACGCACAGCAACGTCAAGCGGTTCAGTTGCAGCCACTGCAATCGCAACTTCCACCGGGCGCAAGCGCTCAAGCATCACGAGATGAACAAGCACAGTCTTAAGTGCGATATCTGTTCTCACGCTTTTAAGACTAAGGAGCAGCTGGTTACTCACAATTGCGAACAATCGAACGAGACCAAGAAGCATACGAGCTCGCAGCTACCGAAAAAAGCATCCGGATCATTTAAGCCGAGGAAGCCCACCCCAAAGAGACAAACGTTATCAAAGACTGCAATCCCGCTCGCCGACAAAGAGAAATTAGAAAAGCTTAAGGCTGATGAGATagagaaaaaaATCGCCTCCGAAACATTTAAATCTGGCGATTTCGACGAAGAATCCAGCAAAAAAATGGGGAACGTTCCTCCCATCTCGAAAGCAGTCGAATCGGTCAGCGGTGAATTAAACGAGCGCTCCGACTCGCCAGTTATGGAGAACTTCGAGAACGATTTCAAACGCAACATGGAGTTCTATTCGCCCGACGCGAGCGAGTAg
- Protein Sequence
- MAQSLLDALTDVSLDGSSVQSLLESQTLIAEVEQSAIDQDEEDIFQCGKCKSQFTSLQMFVLHKRTHQKTQQQVDLTQFLTNDESQVMHVEDAAQDESQYNSQETFQLGEPIILEEADMLFSVDQDAANYFMTDSTFSVPIILSTESLDTFGNAAIEATEDSSEVPAIHLQNDISSQEDASSQSEQPSASLTNNEPSLAENEPPLEDNESSLENNETSLQDSLGESENGISQTQNLKYKCGYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKETFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFSDLEEFLEHTRSHKCSEYRCHVCGEVFSTLSDLGRHQYVHSVQKQKTTEKYYCCSTCKSSFSNLEALQHHKETTTHNYACLHCGKSFLIERFLRRHLKTHSASARFACEDCGKAFKTEQYLANHKLIHSEETPFTCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRNYLGCMSEFSRPDKLKRHLLTHSNVKRFSCSHCNRNFHRAQALKHHEMNKHSLKCDICSHAFKTKEQLVTHNCEQSNETKKHTSSQLPKKASGSFKPRKPTPKRQTLSKTAIPLADKEKLEKLKADEIEKKIASETFKSGDFDEESSKKMGNVPPISKAVESVSGELNERSDSPVMENFENDFKRNMEFYSPDASE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110004;
- 90% Identity
- iTF_00016851;
- 80% Identity
- -