Tuni021414.1
Basic Information
- Insect
- Temnothorax unifasciatus
- Gene Symbol
- -
- Assembly
- GCA_030770225.1
- Location
- JASTWK010000561.1:52833-56844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.025 4 9.3 0.2 6 21 12 27 6 28 0.86 2 14 0.68 1.1e+02 4.8 0.3 2 22 34 54 33 57 0.88 3 14 4 6.3e+02 2.4 0.3 1 12 237 248 237 257 0.88 4 14 0.026 4.1 9.3 1.9 1 20 368 387 368 389 0.95 5 14 8.4e-05 0.013 17.1 0.1 2 23 394 415 394 415 0.97 6 14 0.0071 1.1 11.0 6.0 1 23 426 448 426 448 0.95 7 14 0.02 3.2 9.6 0.3 1 23 467 488 467 488 0.81 8 14 0.00032 0.05 15.3 0.1 2 23 494 515 493 515 0.95 9 14 5.8e-05 0.0092 17.6 4.8 1 23 578 600 578 600 0.99 10 14 2.5e-06 0.0004 21.9 3.7 1 23 606 628 606 628 0.96 11 14 0.0013 0.21 13.3 3.9 3 23 636 656 634 656 0.97 12 14 1.7e-06 0.00028 22.4 0.8 1 23 662 684 662 684 0.98 13 14 3.7e-05 0.0058 18.2 0.2 1 23 688 710 688 710 0.99 14 14 0.00086 0.14 13.9 0.2 1 23 718 740 718 740 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCGATCAACCTGATCTGCCCTATGTGCTGCGGCGAGACCTTCAACAATCCTCAGTCCCTCAAGTACCACTTGTTAAGCCTGACGGACAATCTCTATTGCCCCGGCTGTTCCCAGCGTTCCGACTCTGTGACAGCGCTCATTCAGCACCTGGACATGTGCGAGCACGATCTCCGGTACAAGATGAAGCCCGAGATTCTGACGGACAAGCTCAGGAAGGGCGGAAAGGAGCCCGAGATCAAAATGGATTTGCTAATGGATGTCAAGGCGCAGCAGATTAATCGGAGCTTCCTCGCGACCATGGGCGGCAACGGAGTTATCATAATGGGCGATCCGCAGACGATACAATTGGATGAGAATGGAGAGATTAAAGTCGTAGAAAAGATGGACACGGAAGAAACGCAACCAGATGAAAATTCTCTGGATTTCAAGATGTCCGAAGGACTCGCCGGCGACGGTGGCGGGGCGCAGAGAAGATTGCAGTCGTCGCAAGGATTGATGGCTATTCCCATATCGAATGCAGACCGCAAGACGGCATCGATGGAGAAGAATATAATCGCCGTGTTACCGGACAGTTCCGAGCTCCTGGATGGTGAGGCCGCTGCCCTGATCGATGTGGATCGTTTAAACGAGACAGGGGAGATCGACGAGGCTGGTTTTCTGCGTGTCAAGCGAGAGCTGTGCGAGCTCGAGTCTGACGCTGTATATAGTTGCACCAGTTGCGAAATGAGCTTCAACTCCGTCCTGGAGCATATCAAGCAGTTCCACGACGGCCAGGAGGTTTTGCTGGAGATGGCGGAGCAGCTGAATGATCTGGCGACGACAAGTCCGGTATCCGTGTTGTCCGAGGGCTCGGAAAATGTGGCGAACGCACGGCAGCGGCAGACGATGAACACGTTGCGCACGGAGGAATGTGTGGATAGCGAGGGTAGGCTCTACACCAGAAAGGTCGTGCAAATAGAGAAATTCTGGGACCGTACTCCGATACAGGTGACAACGTCACAATCAGCGAAGGCTCCGATGATCGAGAAGTTCTTTTCGAATGTGGAAGGTGTTAAGGTACGAGAGAAACGCCTGGCGACCGCGTCGATGCGAATGTACAAGTGCAATCAGTGCCTGCAGCAGTTCTCCAAGTTGGGAAATTTTCGCGTGCACGCCTGTCTCCGTGGCAATAATCGTTGCGAGCAATGCGATCAGAGCTTCGCGACCCCTAGAGCCTTGCAACTTCACGCGAAGGTGCACGACGGCGAAGTCGATCCGAACCGGAAGACGTTCCTCTGTACCACGTGCGGCACCGAATTTTGCTCCCACAAAAGCTTACGACTGCATTCGAGGATGCACGCGCCAGTGAGAGCCAGACATGTCGATGCACCCGAGGGCACCCCTAACGCGACTTTCACGTGCCCCGAATGcgGTAAAACGCTATCCGAATCGTACAAAGACGCGCACATGACGCTTCACACGGGCGACTCAGTGACGTGCACCGTGTGCAACCGGAAGTTCGATTCCGCGGACAGCCTGACGATGCACGCGGCGGTGCACGTCGAACTGGCACCTCCGCAGTCGCCTATTATGCAGACTTTGATTTCGACGTCTTCCGAGGCAACGACGACATCAGCGACGACGCCAGCAACGATAACGCCGGCTTCGACGGTAACGTCAACAACGACGGTAACGACGGCGACAACGACAGTGACAACAATGGATCCAGGGGACAGCCAGAAGCCCTATCAGTGCCAGCATTGTGGACGCAGGTTTACCAGACCGCACGAGAAAGTCAAGCATGAACGAATTCACACCGGGGAGAAGCCGCATGCCTGTGAGGTTTGCGGCAAGACCTTTCGCGTGTCCTACTGCCTGACCCTTCACATGCGCACGCACACGGGCGTACGGCCCTACGGCTGTCAGCATTGTGGCAAACGCTTCAAGGCGTCCTCCGTCTACAATCATCACTTGCTGACGCACGGCGATGAGCGCGCCTACACGTGTCCGTACTGCCCGAAGACGTTCAAGACGCGGGTGCAGTTGGCTGGTCACAAGAATAGCCACACGAAGCCGTTCCGGTGCACTGAGTGCTCACGGCCGTTCGCGTCGCTCTACGCTGTTCGCGCGCACATCCAGACCCACAAGAAGGACAATAATCTCAAGTTCAGCTGCTACGTGTGCGGCGCGTCGTATGGCCGGGCGTTCGCCCTCAAGGACCACCTGAAGCAGCACGGTCAGGACGTGCTGGCGCTACCGGAGCCAGCGCGGGAGGAAGAGGTACACGAAAACTTTCTCCTCGGCGAGGAGGAAGCTGAGGAAGACGAGTTCGTGGCCCCGCCACCACCGCTGCCGCCGTCGCTTCCCGTCGTCGCGCGCTCCTCCGGCGTGGACGACACCAACTGA
- Protein Sequence
- MGSINLICPMCCGETFNNPQSLKYHLLSLTDNLYCPGCSQRSDSVTALIQHLDMCEHDLRYKMKPEILTDKLRKGGKEPEIKMDLLMDVKAQQINRSFLATMGGNGVIIMGDPQTIQLDENGEIKVVEKMDTEETQPDENSLDFKMSEGLAGDGGGAQRRLQSSQGLMAIPISNADRKTASMEKNIIAVLPDSSELLDGEAAALIDVDRLNETGEIDEAGFLRVKRELCELESDAVYSCTSCEMSFNSVLEHIKQFHDGQEVLLEMAEQLNDLATTSPVSVLSEGSENVANARQRQTMNTLRTEECVDSEGRLYTRKVVQIEKFWDRTPIQVTTSQSAKAPMIEKFFSNVEGVKVREKRLATASMRMYKCNQCLQQFSKLGNFRVHACLRGNNRCEQCDQSFATPRALQLHAKVHDGEVDPNRKTFLCTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMTLHTGDSVTCTVCNRKFDSADSLTMHAAVHVELAPPQSPIMQTLISTSSEATTTSATTPATITPASTVTSTTTVTTATTTVTTMDPGDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDVLALPEPAREEEVHENFLLGEEEAEEDEFVAPPPPLPPSLPVVARSSGVDDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126922;
- 90% Identity
- iTF_01407596; iTF_01408483; iTF_01405964; iTF_00385782; iTF_00765848; iTF_00885343;
- 80% Identity
- -