Tuni025983.1
Basic Information
- Insect
- Temnothorax unifasciatus
- Gene Symbol
- -
- Assembly
- GCA_030770225.1
- Location
- JASTWK010000849.1:9964-13434[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00057 0.091 14.5 0.8 3 23 71 92 70 92 0.96 2 12 8.6e-06 0.0014 20.2 0.7 1 23 99 122 99 122 0.98 3 12 0.00039 0.063 15.0 0.2 1 23 128 151 128 151 0.94 4 12 1.2e-06 0.00019 22.9 0.7 2 23 185 206 184 206 0.97 5 12 3.9e-05 0.0062 18.1 2.6 1 23 212 234 212 234 0.98 6 12 0.0021 0.34 12.7 2.6 2 23 246 268 245 268 0.95 7 12 0.0043 0.68 11.7 2.6 1 23 274 297 274 297 0.94 8 12 8.8e-05 0.014 17.0 2.5 2 23 310 332 309 332 0.96 9 12 0.0015 0.23 13.2 0.5 2 23 338 360 337 360 0.95 10 12 1.9e-05 0.003 19.2 0.4 3 23 369 389 367 389 0.96 11 12 0.0001 0.016 16.8 1.8 1 23 395 418 395 418 0.96 12 12 0.00015 0.023 16.3 2.2 2 23 425 446 424 446 0.97
Sequence Information
- Coding Sequence
- ATGGATGTTGAAGTGAATAATGAAGAAATGGAAGTTGAATTCAATGAACAAGAAGAAATGGAAGTGATTGAAGAACTAGAAATGGATGTTGAccacgatgatgatgatgatgatgatgatgatgcgaGATTATCGGAAGACTCATGTTATGATAGTGACATGCCTGAAGATGCTCCACAAAAACACGCTGACACTGTCTACGGTCAACTTTGCGAAATTTGCGGCGAGAGAGTTAAACACCGAGCAAGTCTGTACCGGCACTTGAAGGCGCGACATACGAGTTTGGATGAGATTTATCAGTGTCCAAAGTGTCCGAAAAAATTTGCTCTCCAACAAAAGCTCAACCTTCACCTAAAATCGATTCATACAACTTTGAAGGAGTACCTGTGCGAGTATTGCGGCGCGGATTTTAGAATACCCGCGAGCTTGAAACGTCATAAAATCAGACAACATCAAACGATTGGAAAAGAAAGGCAATGTCAGGTTTGCGGCAAATTGGTGCCGTTTCACAGCCTGCCCAAACACATGTACACGCATAAAGCTTACAGTATCCAATGTCCGCATTGCGACAAAATGTTCAAAAATAGCACGGCCCTGGGGCAACACGTGAGAATTCACCGGGATGAGAGGCAGTATCGTTGCAACACCTGCGGCGTTGGATTTAATCGGAGAGACTGCCTGAGGCTGCATACGAAGGTGCACGAAGAAAACGATGGTAGAGGCTCGCAGGAGTGTTCCTGCCAGGTATGCGGAGAAAAGTTTCCGAATTGTTCGACTTGGTTGATTCATAGGAACCGAGCGCACAAAGATGGGAGGCGGTATACGTGTCACATTTGTAACAGGTCAATGACCTCGACGATATCGCTCGAGCGGCACGTGTCGCACATTCATAACGAGTCGATCGCAGGTAACaaaaaaaaacggatttccTGCCGTCATTGCGATAAGACCTTCAAGACGGAAGTAATTCTTCGCAGGCACATGAAAATTACGCACATGGCGGACCCGCTAAAGTGCGCCGACTGCGAGGCTACTTTCACATCTGAAGTACGTTTACGTCATCACACGATGGTCGTGCACAATTGTCTCGAGGGCACTTGGGCGTGCCCTCGTTGTCCGAAACGATTCGCGAATCAATTCAGGCTGAAGACTCACATGATTTCTCATTCCGAGGAAAGGCCGTACACCTGCGAGGTCTGTGGTTTCAACCTAAAGACAAAGACCAATCTGTTGAAGCATCGTCAAAACCGACACAGTGACGAGAGACCTTTGCGGTGCAGGTACTGTCCGTGGCGGTGCAAACAATCGAATGCCCTCGTTCGTCACGAACGCACGCACCGATGA
- Protein Sequence
- MDVEVNNEEMEVEFNEQEEMEVIEELEMDVDHDDDDDDDDDARLSEDSCYDSDMPEDAPQKHADTVYGQLCEICGERVKHRASLYRHLKARHTSLDEIYQCPKCPKKFALQQKLNLHLKSIHTTLKEYLCEYCGADFRIPASLKRHKIRQHQTIGKERQCQVCGKLVPFHSLPKHMYTHKAYSIQCPHCDKMFKNSTALGQHVRIHRDERQYRCNTCGVGFNRRDCLRLHTKVHEENDGRGSQECSCQVCGEKFPNCSTWLIHRNRAHKDGRRYTCHICNRSMTSTISLERHVSHIHNESIAGNKKKRISCRHCDKTFKTEVILRRHMKITHMADPLKCADCEATFTSEVRLRHHTMVVHNCLEGTWACPRCPKRFANQFRLKTHMISHSEERPYTCEVCGFNLKTKTNLLKHRQNRHSDERPLRCRYCPWRCKQSNALVRHERTHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -