Tuni011678.1
Basic Information
- Insect
- Temnothorax unifasciatus
- Gene Symbol
- cbh2
- Assembly
- GCA_030770225.1
- Location
- JASTWK010000197.1:137440-139107[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-06 0.00089 20.2 0.0 1 39 9 47 9 51 0.93 2 3 3.4e-06 0.0029 18.5 0.0 2 38 67 103 66 107 0.90 3 3 9.8 8.6e+03 -2.2 0.0 17 27 409 419 406 419 0.87
Sequence Information
- Coding Sequence
- atggcACAAAATTATAAGAAGTGGTCTGAGGAAAGCATGGCTGCAGCAATCGAAGATGTTATGAAGAACAACATAAGCTACATAGATGCTGCTGATAGCCATAAAGTTCCTCCATCTACTCTGGGCGAAAGGATAAGGAAAGCTAAAAAGGAAGGTCTATCTTGTTTAGAAGCTGCCCAGAAAAAGCAGAGCTGGTCTGATGAAAGTATGGCCGCAGCAATCAAAGATTTTATGACGGAAATGAACCAGAAAGAAGCTGCTAAAACCCATAAGGTTCCTCTTAGTACCTTTAGACAAAGGataaaaaaagctaaaaaaaaagatccgACTTTTTCAGAAGCTGTCCCGAGAAGATTAGGCAGTTGTGAAACTTTTTCAGAGGCTCAAGAAAAGGAATTTATAAAACACATACTggttttaaaagaaagaagaatgtTATTTGGCATCACTTCAATAGATATACGCAAACTCGCATTTGAATTTGCTGAAAAAAACAACATTCCACATATGTTCAACAAGGAAAAGGAAAGAGCAGGGAAAAAATGGTTATACAGATTCCTCAGCAGGCATAAGCAATTATCGCAAAtgaattttgaagaaatttcTCCTGCAAGCGCAAAGGGCTTAAACCAGAAAGCatttcaatcattttttaatttattagagtctgtttataaaaaatacaatttcttacctaaaaacatttataatgtCGATGAAACGGGCATTATAATAGAGCCAAAATCGTCAAAAGTACTAGCACTGCGGGGAACAAAGCAAGTAAACTATTCCAGTGAAAAAGTTCTCGTCACTGCTGAGACATGTATGAATGCTGCTGGTGATTATATGCCCACAATGTTTATTTTCCCTACAAAAAAAGCAAGGCTTGCGTTGATGGATGATGCTCCTCCCAACTCATTTGCCGTCTATCACGAGAGTGGATCGATTCAGAAAGACAGTTTTATTACTTGGTTCAAGAAATTCATTGAGTTTTCTCGCCCCTTACGTGAAAAGCCAGTGCTTTTGCTTCTAGATGGACACGCTTCTCATACCAAAAGTGTGGAGCTTATCAAACTTGCACAAGAAAACAACGTCATTCTCTTGTCCTTCCCATCGCATTGCACACATCGGTTGCAGCCACTTGCGATATCATTCATACCTCCTTTGATGACATATTATAAACAAGAGGTGCAAAAATGGCTAATTGGTCACCCAGGACGATGTGTAACAATATGTAAAGTGGCGAAACTATACGGAAAAGCTTTTTCTAGAGCAGCTGAAAGACAAACTGCTATAGACGGTTTTGAAAAATCGGGAATATACCCATTGAATAAAAACGTGTTGGCTGATCTTAATGTTCCATCAAAAACGTCTGAAAAATCTATGCAGCAAAAAATTCAAGGTGATGAGGCCCGCTCTGTAATATCtggaaatgaaaaaattcaccCGTCAACATCTATGACTTCCTCGAATTCCCCTTCCCAAGAAGAAAAACATATTCAGGAGAGAAAcaagaaaggagaaaaaactGCCATCCTGAATTCGTCTCCCTACAAAAAGCAGGAAATGGAGACTGCCACTCGGAAAAGGAAGTTAGAAATAGAAACCcataaagttgaaaaattaaagaagagaaaaaggcAGAGAAACAGCACATCCTCAGATTAG
- Protein Sequence
- MAQNYKKWSEESMAAAIEDVMKNNISYIDAADSHKVPPSTLGERIRKAKKEGLSCLEAAQKKQSWSDESMAAAIKDFMTEMNQKEAAKTHKVPLSTFRQRIKKAKKKDPTFSEAVPRRLGSCETFSEAQEKEFIKHILVLKERRMLFGITSIDIRKLAFEFAEKNNIPHMFNKEKERAGKKWLYRFLSRHKQLSQMNFEEISPASAKGLNQKAFQSFFNLLESVYKKYNFLPKNIYNVDETGIIIEPKSSKVLALRGTKQVNYSSEKVLVTAETCMNAAGDYMPTMFIFPTKKARLALMDDAPPNSFAVYHESGSIQKDSFITWFKKFIEFSRPLREKPVLLLLDGHASHTKSVELIKLAQENNVILLSFPSHCTHRLQPLAISFIPPLMTYYKQEVQKWLIGHPGRCVTICKVAKLYGKAFSRAAERQTAIDGFEKSGIYPLNKNVLADLNVPSKTSEKSMQQKIQGDEARSVISGNEKIHPSTSMTSSNSPSQEEKHIQERNKKGEKTAILNSSPYKKQEMETATRKRKLEIETHKVEKLKKRKRQRNSTSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -