Basic Information

Gene Symbol
JARID2
Assembly
GCA_030770225.1
Location
JASTWK010000289.1:133783-149637[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 3.2 1.2e+04 -2.1 0.2 55 83 155 185 136 186 0.65
2 3 2.8 1.1e+04 -1.9 0.0 38 65 1106 1132 1100 1143 0.82
3 3 7.8e-23 3.1e-19 70.4 0.0 6 89 1365 1446 1361 1446 0.94

Sequence Information

Coding Sequence
ATGGTTTTGAGTCGCAACGacaagagaaagaggaaggagGGAGACTTGGTGGACCTCATGGAGCCACTTTCAGAATCTTCAAAAAGGACCAAAGTTCATGCACAAAGAAAATTTGCACAAGGTGCAATCACAGTGTTCAATACTTCGCCTACATCTGTCAAGGACAAGGAAAAAGCAAAACCTACCACAATTACAGAATTAATAACTCACAAACGTCCAAATACGGAggattttttaacatttttatgctTTAGAgGAACATCTATTTTGCCACCCAGtttaaatttcttcaatatcggcaacaaaaaagagaaacaggAGCCCAAGCCAGCTCAAACTTCTACAGAGAAGGCTTCTTCTACTAGTACTTTTACAGATATTCAGAAGCAAGAAAGTACATGCCagaaaaatgtgataaaagaaaatacatgCCAGAAAAAAGTAAAGCCTATTGTTTCAAATAAGAAAACGGTGGCTAGTACATTACAAAAAAGCATTACCAAGCTTAAGACAGCTACGTCTACTGTCCAAgcgcttaaaaaaaaatatcaggaGCAACGCCTTGCTAAACAAagaatcaaaaataaattcaaaaccACTTGCGTTATGAGGACAAGATCGTGTACAGAAAGATCTATGTTGAAGGCTGGTCTTCAGTTGGCGCCGCGAAAATTCTTACCTAGAATCAAGGCGAAGAGACATGGCCTAAGAAGTGGTGTTGTACTGCCAGATAAAATCAACAAATCTCTGTCAAAAACGAAAGTTGCGTTACCCAGACCAAAGAAGAAAGTCGATTTTAAACCGAAAAATAGTGATACATCGAATACAGATGTGTCATCCGAAGAAGAGAACGATGTCGAGGACGAAGAGAAAGAATTACATGTGGAAAAATCGACATTGCAGATAAAGCGCAACATTCAAAaaggcataaaaaaaaaaatctgcacCAGAAGTAAGTCAGAGATGAGGAGAGTTACAAGATCATTCAGTAGCACGGTCTCCTCACAGAATCTCTCCAGAAGGCCTACCAGAAAAACGAAGGAAGCAGCCGCTGTATATATGGAAATTCTTGGAAGGAAATTAGTGAGCCCGGATTTAGAAAATGACGATAACGTTTCAGTTGAGAGCTTTCCCGAACTGCCAAATGCTCGTAGAATAGCGCAAACGGAGAACGAGCTTAAAGCCAAAGTGAAACAGAATAGTACCAAGACTATCGCTAAAACTAAAGATTCTAAAGTTAGCTCTCTCAATAGTAACACTAATAAGCGATTGGATAAGAGCAAAAACAACAAGTTGATTTTAAAGAACAAACGTCTAATGAGGGTACAGAGATATTGCGAAGAGGATAGTGACGAAGAATCTGAGAGTTCAATAGAAACGAACAATACAAGACCCATTACCAGACAAAGTCTTGGAAAGATTGATAAGCCGATTAGCAGGAGTCTTAGATCATCCTCTAAAAACATAACTATACAAACAGAAATACAAAGTAACACAAATACCAAACCGAAGACCCAGGTTCAAAGTTGTATGAAATCAGCTAGAGAAAAATTCGTGATAAAACGTAAACGTGAGCAAAATGTATCTAAAACATCGTCGGATAAGATTAAGCAAAAAAGCCTTAAAAGTAATCAAAACGAGAAAGCGGAATCCGAAGAGGAAACTTTGGGAATGCTgctcaataaaataaagaagaagaaagaaaatgacGAGGAAGAAGGACAGATCCCTGACAATGTTGATAATACGAAAGATGGAAAGGCAGGTCACGGAAACAGGCAAAATGTGAAAGCAGATCTGTCGAAGGTATCGGACGACGAGGAATCTTTTCGTGGGTTTACTAAGAAGGCGATATCAAAAGTATTGAATTCATGTCAAACGCATGCCAATGTTAATCTGCTAGTCAGAGAGTCCGATGAAAAGCTGAATTTGTCCAAAACTTTGGACGTATCGCAAACAATGGATAAAAGCGATACTTTATGGGAAAGTAAAGTAGAAACATCATCAGTCAAAGCTAGTTCTCTGGTCGCAAATTCACTGAATGGCGAGTGCAACGTATCTGTGCAGGATCAAAAATCGGTATTGGATTTGTCTGTAAAGACACAAAGCTCGTTGTTGCCATCCATGGAACAGACGAAATGTAACCATGAAAACGAGGTTTCTTCAAATCTTATGCCACTATCTACTCTGCATACGAGAAAGGAACGAGTGAATATGTCGACTGAACAGATAGAAAAGTGGCTAAACGAAAGCTCACTCGCCAAAGAAGAGAGCAAATTGGAGATGGAAAATGTCTCCAGCTTTAGGTGCAATTCTACGAAAGAAAAGTTAAAGACGGACGTCTCGCATCTGTCTATCTCGACGAAAATTCAACATTTAGTACGCCCGGTTAATGTCACTCTTTCAAAATTATCAGATAAGACGAATTTGAAGGACCGTGCGGGGATACACGGCAGAAATATGATATCAGCATCATCTGATATGCATAATACTGGAGTGAAGCAACAAAATGCGATTGTCGACAAGAGTAAGATTATTATCGAAACGAGAGAGATTGCCAAGAATAAAACTGAGAAGACGAACAAAGATACTTCTTTTGCTGAAGATACTAGCGATACTGTGTCCAAATCAGATCAAAACTCAGTGGATGGTTCTATAGAGAAGAAATCACCGAcggagaagaaaatatttcaactgCGGAAGCCCTTTTTGCCTAAGGTCAAGGAACGTAAGACTGTAACACGGAATGCGAACGCCTTTTCGCCAGAGAACGAGAGCAGCGTTTATGCGTTTGAAAGCGATACTGAAGTTCCTGTTAGCACACCCTTCCGAAGAAAGGTCAGAGATGATGTGAAACGTTCGACTGCAGTAATGCAGTCCACAGCGGTTATAGTATCAGAGACCAAAGTAATTGCCGAAGCCAAGAAATCGAGTTTGAAGGAGGATTCTGAATCGTCAGATAGCAAAGAAAAATCGTCGAACGATTCCGCGATGCTCATGAGGAAAGAAGATGGAAAGGAGACACAAGGACCGATAAACGCGGTAAATACGGGTCCAAGCGTGAGCAGGTTTGAGCTGCCCAAGAATTTCGCGAGCTTGACCAGTGTCCAAGTGCTGCCACTCGACAAACTCACGACGAGTTGGAGCAACGTAAATTGCAGCGCTTCCATAGCAGTGCAGGTGAATCTCGACGAAACCACGCAGGAGCAAGAAAGCGATGCGAGTCAACAAAAAAGTACCGAGATATCCACTCAGACCGAAATGAGTAACGAAAatgacgacgacaacgacgggCAGCTGTTTTACATTCCGTTGCAGGCTGTTACGAGGGGCGGCCCGAATCTGGTACAAGGTCAACAGCTAATACAAGGCGTCGCTGTTAAACTTGGCACGGAAGGACCGACCGGTCCTAATCAAAGAGTGCTCCTTCGGGCTAAACTGGTCACTAAACCACCGTTATCCGTGGCCCGTTGTCCACCGATAGGAACGGTACAACCGACAACACGTACCCCGTCCAATTCTACAACGATTACGGTGGAACAGCAAGTACCATCGACGTCAACGTCGTCGACTGTATCGACCACGATAGCAAGTATGAGTGCGAAGACGCAACCGATATCACTAACGAAAAATGAAGTCTCGATACCAAGTACTGTTGCTCCGAATCGTCCAAATGCCATTACGAGCGCAAATAGCAGTTTGGAGAAACTTATAAAGTCATCAAAGTCGTCTAGGGAAAGAAAAGCTTCTATAGATTCGACAAAAAGCGGGAAGAgGACACAAATGAAATGCAAACAAAAAGAATCGGAGCTATGCTCTTCAAGCAACAGTACATTTCCAAGCACGAAGATCGCGAACGATGAAGCTCGTGTAGTCGAGGCACCAACGTTTTATCCGACGGAGAAAGATTTCCAGGATCCATTAGAGTATATAGACAAGATAAGGCCAATCGCTGAAAAATTTGGAATATGTAGAGTGGTGCCTCCACCAAATTTCAAGccGGAATGCAAGGTGTCCGACGATATGAGATTTACCGCTTATAATCAATATGTACATCGCATGCTCCACAGATGGGGTCCCAATGTGAAAGAAATGATGGctatcaagaaatatttagctACTCAGAGTATTACTTTGACTCAACCTCCATGGATTGGTGGGATGGAAGTAGATTTACCTCACTTATATCAAACAGTTCAAAGCTTAGGTGGATTGAAAGaagttattgaaaaaaagaaatggcAGAAAGTAGCAGATGGCATGAAGATACCAAAATCGGCACAGGATCGTGTTACTAAATTAGacgatatttattgtaaatatttactacCATATGATACACTATCGCcagaGGAACGTGAGAAATTGTTCGACGAAGTTGAAACTGAATGGATGAGAAAAGAAAGCAAAGCCTTGCAAAGGCAAGAAGTGTCGTCCAATGATAACGATGAGGAAGAGGATGAGGACAGTTCTGATGAAATTGAAGAATGCATCGTAAAAgGAAGAAACATGCCGTTGAACGCTTTTTACCGAATTGCCCGTAATACGCAACGTATGTGGTTTGGTGAAAATCAACGAGGAAACGAAACCGAGGGTGCTTTCGCCAATGAGGTGGAGAGTGCATTTTGGAAACACGTTGCCGAGAGAAAACGTCATGTTTGTGTACATGCGGCAAGCATTGATTCCAGTGGTCGTGGATTTGGCTTTTCCGTTGCAAAAAACAGTCCGTTCGCTAGACATCCTTGGAATCTTAAAGTTCTCACTAACAATGCTGGATCAGTATTGAGAGCTTTGGGTCCACTAATGGGTGTGACCGTACCGACATTGCATGTGGGTATGTTATTTAGCGCTTGTTGCTGGTATCGCGATCCACATGGTTTACCATGGATAGAGTATCTACATACAGGTGCCAAAAAGATTTGGTATGGGATACCCGATGAgcataataacaattttcgaAAAGCACTTTGGAAAATGGTACCACGATATTGCAAAAACAAGACTATATGGTTACCTTCTGACACTGCCATGGTTCCACCAGAATTATTAGTAAGCAACGGTGTACCGTTATGTCAGATAGTACAAGAACCGGGACAATTTATAATAGTATTTCCAAAAGCGTTCACATCTAGCATTTGTACCGGTTATGTAGTATCCGAAAGCGTATATTTCGCACAACCATCTTGGTTAGAAACCGCGGAACAAGTATTTAAGGACATACAAGACAGTTGCGAACCTTCTATCTTTTCATTCGAaagattgttatttaatattattaatgacaCAAGATCTCacatagatatattaaaacagATATTGCCGAGTGTGATAAAGATTCGCGAAAAGGAATTAGATTATCGTAAACAACTGGAATGTGTGGGTCTTATCAATAGAGAAAGATTGCCTTTGCCAGATAGtggaaaaggaaagaaagggaaaaaggTGAAAGAAGATGATGGTGACTTTGAATGTGAGACGTGTAGAGCCAATTTGTTTGTCTCTTTGGTAAACAATTCACAAGATGACAGCGTATATTGTTTGCCGCATGCATTGCATTTAATCAGTTGTAAGAAGCAAGTTCTGAAATATTGTACTCTGATGTACACATATGACGAAGACGAATTAGACGAATTGATTCACAAACTGGAAAACAGGATCGAAGCCAAATCTAAAAAAACGaatcaaataaaacaaaataagcAAGAAAGATAA
Protein Sequence
MVLSRNDKRKRKEGDLVDLMEPLSESSKRTKVHAQRKFAQGAITVFNTSPTSVKDKEKAKPTTITELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNIGNKKEKQEPKPAQTSTEKASSTSTFTDIQKQESTCQKNVIKENTCQKKVKPIVSNKKTVASTLQKSITKLKTATSTVQALKKKYQEQRLAKQRIKNKFKTTCVMRTRSCTERSMLKAGLQLAPRKFLPRIKAKRHGLRSGVVLPDKINKSLSKTKVALPRPKKKVDFKPKNSDTSNTDVSSEEENDVEDEEKELHVEKSTLQIKRNIQKGIKKKICTRSKSEMRRVTRSFSSTVSSQNLSRRPTRKTKEAAAVYMEILGRKLVSPDLENDDNVSVESFPELPNARRIAQTENELKAKVKQNSTKTIAKTKDSKVSSLNSNTNKRLDKSKNNKLILKNKRLMRVQRYCEEDSDEESESSIETNNTRPITRQSLGKIDKPISRSLRSSSKNITIQTEIQSNTNTKPKTQVQSCMKSAREKFVIKRKREQNVSKTSSDKIKQKSLKSNQNEKAESEEETLGMLLNKIKKKKENDEEEGQIPDNVDNTKDGKAGHGNRQNVKADLSKVSDDEESFRGFTKKAISKVLNSCQTHANVNLLVRESDEKLNLSKTLDVSQTMDKSDTLWESKVETSSVKASSLVANSLNGECNVSVQDQKSVLDLSVKTQSSLLPSMEQTKCNHENEVSSNLMPLSTLHTRKERVNMSTEQIEKWLNESSLAKEESKLEMENVSSFRCNSTKEKLKTDVSHLSISTKIQHLVRPVNVTLSKLSDKTNLKDRAGIHGRNMISASSDMHNTGVKQQNAIVDKSKIIIETREIAKNKTEKTNKDTSFAEDTSDTVSKSDQNSVDGSIEKKSPTEKKIFQLRKPFLPKVKERKTVTRNANAFSPENESSVYAFESDTEVPVSTPFRRKVRDDVKRSTAVMQSTAVIVSETKVIAEAKKSSLKEDSESSDSKEKSSNDSAMLMRKEDGKETQGPINAVNTGPSVSRFELPKNFASLTSVQVLPLDKLTTSWSNVNCSASIAVQVNLDETTQEQESDASQQKSTEISTQTEMSNENDDDNDGQLFYIPLQAVTRGGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPLSVARCPPIGTVQPTTRTPSNSTTITVEQQVPSTSTSSTVSTTIASMSAKTQPISLTKNEVSIPSTVAPNRPNAITSANSSLEKLIKSSKSSRERKASIDSTKSGKRTQMKCKQKESELCSSSNSTFPSTKIANDEARVVEAPTFYPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEEREKLFDEVETEWMRKESKALQRQEVSSNDNDEEEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRGNETEGAFANEVESAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFRKALWKMVPRYCKNKTIWLPSDTAMVPPELLVSNGVPLCQIVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDTRSHIDILKQILPSVIKIREKELDYRKQLECVGLINRERLPLPDSGKGKKGKKVKEDDGDFECETCRANLFVSLVNNSQDDSVYCLPHALHLISCKKQVLKYCTLMYTYDEDELDELIHKLENRIEAKSKKTNQIKQNKQER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01423428;
90% Identity
-
80% Identity
-