Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: salm
Assembly: GCA_035220575.1
Location: JASTWL010000062.1:195100-210947[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.9e-05 0.0048 18.6 1.0 1 23 380 402 380 402 0.98

2 9 1.2e-05 0.002 19.8 2.1 1 23 408 430 408 430 0.98

3 9 5.4 8.9e+02 2.0 3.3 3 23 796 816 795 816 0.92

4 9 5.2e-08 8.6e-06 27.3 0.6 1 23 822 844 822 844 0.97

5 9 7.3e-05 0.012 17.4 2.6 1 23 854 876 854 876 0.98

6 9 0.015 2.5 10.1 3.2 2 23 1170 1191 1169 1191 0.97

7 9 0.043 7.2 8.6 1.0 1 14 1197 1210 1197 1211 0.92

8 9 7e-07 0.00012 23.7 2.1 3 23 1424 1444 1422 1444 0.96

9 9 2.4e-07 4e-05 25.2 0.9 1 23 1450 1472 1450 1472 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.9e-05	0.0048	18.6	1.0	1	23	380	402	380	402	0.98
2	9	1.2e-05	0.002	19.8	2.1	1	23	408	430	408	430	0.98
3	9	5.4	8.9e+02	2.0	3.3	3	23	796	816	795	816	0.92
4	9	5.2e-08	8.6e-06	27.3	0.6	1	23	822	844	822	844	0.97
5	9	7.3e-05	0.012	17.4	2.6	1	23	854	876	854	876	0.98
6	9	0.015	2.5	10.1	3.2	2	23	1170	1191	1169	1191	0.97
7	9	0.043	7.2	8.6	1.0	1	14	1197	1210	1197	1211	0.92
8	9	7e-07	0.00012	23.7	2.1	3	23	1424	1444	1422	1444	0.96
9	9	2.4e-07	4e-05	25.2	0.9	1	23	1450	1472	1450	1472	0.98

Sequence Information

Coding Sequence: ATGGCAAAGACGAAGACGAAAGACTCAGTGGAAGCTTTTGAATGTGTCAAATGGCGTATAACGGATCCATTGAAGCTGTGCACTCGCAGGTTGAGGAAGAGCTTCCTCAAGTTACGTCGACGAATACCCAGAGAAGAAAATGACTTTACATCAGACGGCGAAGAGAGCGGtggtggaggaggaggtggcGAGGAAGCCGTGGATCTCACAGCGACGAGATCTCATCAGGGCGATGATGATCCTATGGAAGAGGATGAGGAAGAAGGTATCGATGAGCAAGACGAGCAGGATGAGGACGAGGAGGGCTCGCGCAAACAGATACATCATCGCCAAGATGCGGAGAACAATAATAACTTTGTGGAGAGCGGTCTACCTACCGCCATATTCCCGCCCGCTGGAACTAGTCACGTCACCCTCGAAGCCCTTCAGAATACAAAAGTGGCGGTCGCCCAGTTCGCCGCCACTGCCCTCACTGGGGCAGACAGTGAAGCGGCGCTGCAAGACTTGGCATTTCTGGAAAACACGCTGTGCACCCTTCAGAATCAACAGGTATTACAATTACAGCTGATTCGACAACTTCAGCAACAATTATTGATCACTCACGGGCAATCGGTAATGCAATCGCCGGCGACGGAGCCAACTGATAGCAAAGAGGCTTCGTCGTCCCCTATTATTCATCCGAAACCATTGTCGAGTCTCGCGTCACCTCCTTCTTCTCGTCCGCCGAGTCATCATCAGCAAACATCACCGGCGCCGCTGACGCCGAATCTGCTTCAGGAACGACCCACCTCGACGAGCAGCGCATCTCCTTTGAATCTACCCCTGTCGTCGTCCGGCGCGACGTCGACCGTCATCACGACCACCAGCAGCCAAATGCCGATGCCGCATCAAATGCCGCCGCTCTGCTCGATAAGCGCTTCCCTTGCTTCATCGATCATAACGAATACCGATCCGCCGCCGCTTCACGAGCCAAACACTCTGGACATTCTTCAAAAGCGCACTCAGGAGGTATTGGATAACGCGAGTCAAGGGCTAGCCAACAATTTGGCCGACGAGCTCGCGTTTAGAGGCAAGGGCTCGCGACTCTCTCCTTACGATTCAAAATCGAGCGGTGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGCGGCAAAGTCTTCGGTAGCGACTCGGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCCTTTAAGTGCAACGTATGTGGCAGTCGGTTCACGACCAAGGGCAACCTGAAGGTCCACTTCCAAAGGCACACGGCCAAATTTCCACACGTTAAGATGAACCCGAATCCCGTTCCAGAACATTTAGATAAATACCACCCACCCCTCTTGCAGCAAATCGCTTCCGGGCAGAGGCCGATGCCGTCCCCGCCGCCGCCTCCACCACCATCCTCTCATCACCCCTCGTTTCATCCGGCAACAACGCACGGTTTCCTCCCACCACAACCGCCCATGCCTTTGAGTCTCACCTTATCCAATATGACGCCTCTTTACCGGTCCGCAGTTATTAATCACCGGGACGATCAAGATGTGCCGGAGAATCTTAGTAAAGTACCCATAACCACCGCTCCACAGACATCTCCCACTTCTCCCGCTGCCATGTTGAATTCTCGTCATTCCTTTCACGACAATCTCCATCAACAACATCAAAAGCAGCAGCTTGAGCAGAGAGAGGAGATAAAGCTCGAGCAGAGATCGCCCGGACAGGAGCAGTATCAACAGCGACCGATAAGCCGGGAAGGCGCCGAGCGAATAACACCCAAGAGAGAACCTGAGGAAGCGGAAGAAGCCGCGGAGGAGGAGAGCGAAGATTTTGAGGAAACCACGAGACGATACCTCAATTCACCCCAATCCGCGAATCCACCGTCCCAGCCGCAAACGTACGAGGATTGTAGTATGGACAGCAAGATCAGCGGACGTTTAGAGGGCGACGGAGAGATGGAAGTGGACGAGGAGACAGAAGAGCAACCTGAGAACCTTTCGAGCAGAGGTACGATCAATCGTTTGCCTCAACAGATCATGGCGTACCCGGGAGCATCGCCGGCCAGCAGTAGCGCGAGTAGCGGTAGTCTGCAGACATCTTTCGCCGGAATCCTGTTCCCAGGTCCGCCGGCTCATCATCAAATTCCCGGTCTTCCTGTTTCGACTCAGGCAGGACCAACTCCGACATCCGGAAGCGAAATGATCGATCCGGCCAAGGATCCAGCGATTTATTCGACTTTACTACCGCGGCCTGGCAGTAATGACAATTCCTGGGAGAGCTTGATCGAAATAACGAAAACTTCGGAGACGTCCAAGCTGCAGCAACTAGTCGACAATATCGAGCACAAGCTGAGTGATCCTAATCAGTGCATTGTTTGCCACAGAGTGCTCTCGTGCAAGAGCGCGTTGCTGATGCATTATCGCACTCATACCGGTGAGCGTCCCTTCAAGTGTAAAATTTGCGGTCGCGCCTTCACGACGAAGGGCAATCTGAAGACCCACATGGGAGTGCACAGAGCTAAACCGCCGCTCAGAGTGTTGCACCAGTGTCCAGTGTGTCACAAGAAATTCACGAACGCTCTCGTATTGCAGCAGCACATACGCCTTCATACCGGGGAACCTACGGATCTCAGCCCGGAACAGATCCAAGCTGCGGAAGTGAACGAGTTCCCACCCGGTTACCATCCGCTGGCGTCTTTCCTCCCGCAAGGATTTCCGCCGCTACATCCAACCGGCGCGAGCTTCTCCTTGGGATTCCCACCATCCAGGCAAACGGCCATCGAGCAACATTCGCACGAAAGCGACGTTGACGCGAAAGAGGAGTCTCAGCACCAACGACAGAGATTCATGGAGGAGCACAGCGAGGAGATGGAAGATCAGGAAGACGAGGAGCAAGATCACAGAGAGGACGACGAGAGGTGCGAATTGAATCGCGACAGGCGTAGCGTCGAAGTCGAAGAGGAGCAGGACCACGAGAGTCAAGATACGACCGAGCACAAGGACGTGACGCTTCCTATATTTTCGACCTCGTTGGCGGCGCTCGAGAATCAAGTAAGGACCATCACGACGACGGCCACGACTGTGAATGTGGCCAGGTCGCCGTCCTTTCACCGGTACAACGGTAGCGAGAAGAGCACCAGCCCGCCGACCTCCGGTGCCCCGCTCGACCTGACACCCCGCGCTTCGTCCACGCCAGCGTCGGTGGCCTCAGCATCGCCGACGCCGCCACCCCAGACCGCGCCGCATCATCCACCGAATCCTTTCGGCATGTTCGCGGGTCTACTTCAAGCGGTCTCGTCCTCTCCTACCACCAGCACGATAGGCACGTCGAACATAAACAGCGTCACCTCGATGAATGCCGTCAACCCGGGAAGCGGGCCCGGCAGCGGACCACTAGCCTCGCTGACCACTTCGGCGGTACTAGCCGCATCGTCGACTTACAATCCGCTCGGCCTAGCTGTCGGAGGCCCAGCAGTGCGTGGCAACACCACATGTAAATTCTGCTACAAGACGTTCGCGTGCCAATCTGCATTGGAGATTCATTACCGGAGCCATACGAAGGAGCGACCTTTCAAATGCAGCATATGTGATCGAGGTTTTTCTACGAagAACGATGATTCCGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCTCCCACAACCCAATCCCCAATATCGCTCGTACCCGGCGAGACCGGCCGCCGGAAATAGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAACGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCATATGTTGACTCACAAGATTCGCGATATGCCGCCACATCTGTTCAGCGATCCCAAGcatcaacagcagcagcagcaacaacaacagcagcagcagcaaccgcCGCAGCAACCGCCACAGCCGCAACAGCAACCGCAGCCGCAACAGCAACAGGATCAGGAGACTTCCAGAAGTCCGATGTGCGTCGACGATTCGAGCCTACCGCCCCCACCTCCGCCACCTCCACCACCCCCGCCGATGCCACCAACGTCCATTGAGTCCACGATACCGGTAAAGAGATCGCCGGAGGGAGAGCTGCCGGCACCAAAGAGACCAGCCAGCGTGCCGAGCAAGCATTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCCTCGGCGCTCCAGATTCATATGAGAACTCACACCGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCGTTCACCACCAAAGGCAACCTCAAGGTGCACATGGGTACTCATATGTTCACCAACGGAACGTCACGTCGAGGTCGACGGATGTCGTTGGATATACCTCCCCTGCCAATCACGCCCAAGGACTCGGAGTTTCTGCAACGGCGACCGGACCTCTTTTACCCATATCTTCCCGCGCCGTTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGGTTACCGCCCCATTCCTTGAGCGCGGGCAAGTACGCGGCGAGCCTGTTCGGCTCGGTGTACGGTGCCGGCGGGGGTGGTTTCTCCCTGGACAAACAACCAATGGGGCCGACCAGCAACGGGCCTCTGGACGGCAAGTCCGCGATACCCTCGGGATCCATGCTCTTCCAAACACCGTCGCCCTCGCACTCGCCCGGCGCGTCGTCTAACGGCGGCAATCAGACGTCCGCCAGCGTGTCCTGGACCGGCGATACCCTTCAACATCATTTTGACCGAGAAACACCGAGTAGAACCGAGAATGACGCCACCCCGCCCACAGCACGGCTACCACCGCCACCGGCGAGGGGAGAGGGATTAGCCGCGTGA
Protein Sequence: MAKTKTKDSVEAFECVKWRITDPLKLCTRRLRKSFLKLRRRIPREENDFTSDGEESGGGGGGGEEAVDLTATRSHQGDDDPMEEDEEEGIDEQDEQDEDEEGSRKQIHHRQDAENNNNFVESGLPTAIFPPAGTSHVTLEALQNTKVAVAQFAATALTGADSEAALQDLAFLENTLCTLQNQQVLQLQLIRQLQQQLLITHGQSVMQSPATEPTDSKEASSSPIIHPKPLSSLASPPSSRPPSHHQQTSPAPLTPNLLQERPTSTSSASPLNLPLSSSGATSTVITTTSSQMPMPHQMPPLCSISASLASSIITNTDPPPLHEPNTLDILQKRTQEVLDNASQGLANNLADELAFRGKGSRLSPYDSKSSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPPSSHHPSFHPATTHGFLPPQPPMPLSLTLSNMTPLYRSAVINHRDDQDVPENLSKVPITTAPQTSPTSPAAMLNSRHSFHDNLHQQHQKQQLEQREEIKLEQRSPGQEQYQQRPISREGAERITPKREPEEAEEAAEEESEDFEETTRRYLNSPQSANPPSQPQTYEDCSMDSKISGRLEGDGEMEVDEETEEQPENLSSRGTINRLPQQIMAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPGLPVSTQAGPTPTSGSEMIDPAKDPAIYSTLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYHPLASFLPQGFPPLHPTGASFSLGFPPSRQTAIEQHSHESDVDAKEESQHQRQRFMEEHSEEMEDQEDEEQDHREDDERCELNRDRRSVEVEEEQDHESQDTTEHKDVTLPIFSTSLAALENQVRTITTTATTVNVARSPSFHRYNGSEKSTSPPTSGAPLDLTPRASSTPASVASASPTPPPQTAPHHPPNPFGMFAGLLQAVSSSPTTSTIGTSNINSVTSMNAVNPGSGPGSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCSICDRGFSTKNDDSGQQVCSCADQPFAAKGPILPQPNPQYRSYPARPAAGNSEKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDPKHQQQQQQQQQQQQQPPQQPPQPQQQPQPQQQQDQETSRSPMCVDDSSLPPPPPPPPPPPPMPPTSIESTIPVKRSPEGELPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDIPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLSAGKYAASLFGSVYGAGGGGFSLDKQPMGPTSNGPLDGKSAIPSGSMLFQTPSPSHSPGASSNGGNQTSASVSWTGDTLQHHFDRETPSRTENDATPPTARLPPPPARGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01421750;
80% Identity: -