Trug002230.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- -
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000016.1:1205219-1217748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 45 6.1 0.5 1 23 53 77 53 77 0.97 2 17 0.0048 0.79 11.7 5.0 1 21 84 104 84 107 0.96 3 17 0.0006 0.099 14.5 2.5 1 23 177 200 177 200 0.96 4 17 0.0042 0.7 11.8 0.3 3 23 241 263 239 263 0.93 5 17 8.9e-05 0.015 17.1 3.4 1 23 270 293 270 293 0.97 6 17 0.056 9.4 8.3 0.2 2 21 330 351 329 352 0.92 7 17 0.0006 0.1 14.5 3.1 1 21 360 380 360 383 0.96 8 17 0.1 17 7.4 0.8 1 21 421 443 421 444 0.96 9 17 0.00014 0.024 16.4 2.6 1 21 451 471 451 474 0.96 10 17 0.16 26 6.9 0.3 2 21 511 532 510 533 0.92 11 17 0.12 20 7.2 5.0 1 20 541 560 541 564 0.91 12 17 0.0053 0.88 11.5 0.1 1 21 602 624 602 625 0.95 13 17 0.00047 0.079 14.8 2.4 1 23 633 656 633 656 0.96 14 17 0.0049 0.82 11.6 0.2 1 23 719 743 719 743 0.96 15 17 0.00047 0.079 14.8 2.4 1 23 750 773 750 773 0.96 16 17 0.39 65 5.6 0.2 1 21 812 834 812 835 0.94 17 17 0.00012 0.02 16.7 4.4 1 23 843 866 843 866 0.98
Sequence Information
- Coding Sequence
- atgacTAGCGGCACAAACTCTGCCTTTTCACATACGTCTCGACGAGTATCTCTGAAGCATTTTATTGCGAACGAATCATTATTTTCAGATAGCAAAAAACCCACAACTTATCTTCGCAAGAGGATTAAGTACACCAGGAAAGAGGGGTGCGTCAAGTTTTCGTGTCCTAATTTGAATTGCCGGAGCGTCTTCGCGTGGAAAAAGGGCCTGCAGAGCCACCTTCGCTACCACTGCGGCCAGAAGCCGAGGTTCCAGTGTCCCTACTGCGACTACATATGCAAGTTCAAGGGCGACGTAAAGAGACACATTCGGTGCATGCATAAGAATCGCTATGTCTATGTCATCGATATTAAGCAGAATGCTGTTTATAGCAAAAAACCCACGACCTATCTTCGCAAGAGGACCAAGAACACTAAGAGAATGAGGTGCATCAAGCTTTCGTGTCCTAATCTGAATTGCTGGAGCGTCTTCAAGTGCAAAAGCAGCCTGCATGGACATCTTCGTTACTACTGCGGCCAGAAGCCCAGGTTCAAGTGTCCCTACTGCGACTATATATGCAAGTTGAATACCAACGTAAAGAGACACATTCAAGCCAGGCATCAGAACTGCTATGTCTATGTCATCGATATTGAGCAGAATGTTGTTTATAAGAAAGAACCCACAATCTATCGTCGCAAGAGGACCAAGAACACCAAGAAAGAGAGGTGCGCCAAGTTTCTGTGTCCTAAGCCGAATTGCCAGAGCGCCTTCGGGTTGAAAAGTAACCTGCAGACCCACATTCGTTACCACTGCGGCCAGAACCCCAGGTTCAAGTGTCCTTACTGCGACTACACGTGCAAGTTCAAGGCCGACGTAAGGAAGCACATTCGAGCCAAGCATCAGAACTGCTATGTCTTTGTCGTCGATATTGAGCAGAATGTTGTTTGTAACAAAGATCCCACGACCAATCTTCGTAAGAGGACCAAGAGAATGAGATGCGCCAAGCTTTCGTGTCCTAATCCGAATTGCCAGAGCGTTTTTGGGTTGAAACGCAACCTGAATAGACATCTTCGCTACGAATGCGGCCAGAAACCCAGGTTCAAGTGTCCCTACTGCGACTACATGTGCAAGTTCAAGGCCGACGTAAAGAGGCACATTCGGCCCAAGCATAAGAACTGCTATGTCTATGTCATCGATATTGAGCGGAATGCTGTTTATAGCAAAAAACCCACGACCTATCTTCGCAAGAGGACTAAGAACACCAGGAAAAAGTGCGTCAAGTATTCGTGTCCTAATCTGAATTGCCAGAGCGCTTTTGGGTTGAAAAGTAAATTGCATAGACATCTTCGCTACTGCGACCAGAAGCCCAGGTTCAAGTGTCCTTACTGCGACTACGTGTGCAAGTACAAGGCCGACGTAAAGAGGCACATTAGGCCCAAGCATAAGAACTGCTATGTCTATGTCATCGATATTGAGCAGAATGTTGTTTGTAACAAAGATCCCACGACCAATCTTCGTAAGAGGACCAAGAGAATGAGGTGCGCCAAGCTTTCGTGTCCAAATCCGAATTGCCGTAGCACCTTCGGGTTTAAACGCAGCCTGATTAGACATCTTCGCTATGAATGCGGCCAGAAACCCAGGTTCAAGTGTCCCTACTGCGACTACGTATGCAAGTGCAAGGACAGCGTAACGAGGCACATTCCAACCAAGCATAAGAACTGCTATATCTACGTCATCGATATTGAGCGGAATGTTGTTTataaCAAAGAACCTACGACCTATCTTCACAAGAAGATCAAGAACATGAGAATGAGATACGCCAAGTTTCCGTGTCCTAATCCGAATTGCCAGAGCAGCTTCGGGTTGAAAAGCAACCTGCAGACCCACATTCGCTACTACTGCGGCCAGAAGCCGAGGTTCAAGTGTCCCTACTGCGACTACATATGCAAGTTCAAGGCCGACGTAAAGAAACACATTCAAGCCAGGCATCAGAACTGCTATGTCTATGTCATCGATACTTTTAAAAAACGATTAGCGGCACAAATTCTACCTTATCGCGACGAGTATCTCTGGAGCATTTTATCACGAACGAGTCTTTATTTTTCAGATAACAAAGAATCGACGCCCTATCTTCGCAAGAGGAACAAGAATACCAAGAGAATGAGGTACGTCAAGTTTCCGTGTCCTAAGCCGAATTGCCAGAGCGCCTTCGCGTGGAAAAGTAACCTGCAGACCCACATTCGTTACCACTGCGGCCAGAACCCCAGATTCAAGTGTCCTTACTGCGACTACATATGCAAGTTCAAGGCCGACGTAAAGAAACACATTCAAGCCAGGCATCAGAACTGCTATGTCTATGTCATCGATACTGTGCGGAAAGTTGTTTATAACAAAGAATCGACGCCCTATCTTCGCAAGAGGAACAAGAATACCAAGAGAATGAGGTACGTCAAGTTTCCGTGTCCTAAGCCGAATTGCCGGAGCGTCTTCGCGTGGAAAAAGAACCTGCAGAGCCACCTTCGCTACGAATGCGGCCAGAAGCCCAGGTTCAAGTGTCCTTACTGCGACTACATGTGCAAGTTTAAGGCCGACATAAAGAGGCACATTCGGCGCAAGCATAAGAACTGCTCTGTCTATGCCATCGATACTGTGCGAAATATTGTTTGTTAG
- Protein Sequence
- MTSGTNSAFSHTSRRVSLKHFIANESLFSDSKKPTTYLRKRIKYTRKEGCVKFSCPNLNCRSVFAWKKGLQSHLRYHCGQKPRFQCPYCDYICKFKGDVKRHIRCMHKNRYVYVIDIKQNAVYSKKPTTYLRKRTKNTKRMRCIKLSCPNLNCWSVFKCKSSLHGHLRYYCGQKPRFKCPYCDYICKLNTNVKRHIQARHQNCYVYVIDIEQNVVYKKEPTIYRRKRTKNTKKERCAKFLCPKPNCQSAFGLKSNLQTHIRYHCGQNPRFKCPYCDYTCKFKADVRKHIRAKHQNCYVFVVDIEQNVVCNKDPTTNLRKRTKRMRCAKLSCPNPNCQSVFGLKRNLNRHLRYECGQKPRFKCPYCDYMCKFKADVKRHIRPKHKNCYVYVIDIERNAVYSKKPTTYLRKRTKNTRKKCVKYSCPNLNCQSAFGLKSKLHRHLRYCDQKPRFKCPYCDYVCKYKADVKRHIRPKHKNCYVYVIDIEQNVVCNKDPTTNLRKRTKRMRCAKLSCPNPNCRSTFGFKRSLIRHLRYECGQKPRFKCPYCDYVCKCKDSVTRHIPTKHKNCYIYVIDIERNVVYNKEPTTYLHKKIKNMRMRYAKFPCPNPNCQSSFGLKSNLQTHIRYYCGQKPRFKCPYCDYICKFKADVKKHIQARHQNCYVYVIDTFKKRLAAQILPYRDEYLWSILSRTSLYFSDNKESTPYLRKRNKNTKRMRYVKFPCPKPNCQSAFAWKSNLQTHIRYHCGQNPRFKCPYCDYICKFKADVKKHIQARHQNCYVYVIDTVRKVVYNKESTPYLRKRNKNTKRMRYVKFPCPKPNCRSVFAWKKNLQSHLRYECGQKPRFKCPYCDYMCKFKADIKRHIRRKHKNCSVYAIDTVRNIVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -