Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: -
Assembly: GCA_035220575.1
Location: JASTWL010002077.1:1137112-1140057[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00032 0.054 15.3 3.9 1 23 231 253 231 253 0.98

2 11 0.51 84 5.3 11.7 2 23 260 281 259 281 0.91

3 11 7.5e-05 0.012 17.3 6.6 1 23 287 309 287 309 0.99

4 11 0.00091 0.15 13.9 1.6 1 23 315 337 315 337 0.95

5 11 1.1e-06 0.00019 23.1 1.8 1 23 343 365 343 365 0.97

6 11 3.4e-05 0.0056 18.4 1.1 1 23 371 393 371 393 0.97

7 11 9.8e-05 0.016 17.0 1.6 1 23 398 420 398 420 0.97

8 11 1.5e-05 0.0026 19.5 0.0 1 23 426 448 426 448 0.97

9 11 0.00012 0.02 16.7 0.1 2 23 460 481 459 481 0.96

10 11 2e-06 0.00033 22.3 2.0 1 23 547 569 547 569 0.97

11 11 3.2e-05 0.0054 18.5 4.6 1 23 579 601 579 601 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00032	0.054	15.3	3.9	1	23	231	253	231	253	0.98
2	11	0.51	84	5.3	11.7	2	23	260	281	259	281	0.91
3	11	7.5e-05	0.012	17.3	6.6	1	23	287	309	287	309	0.99
4	11	0.00091	0.15	13.9	1.6	1	23	315	337	315	337	0.95
5	11	1.1e-06	0.00019	23.1	1.8	1	23	343	365	343	365	0.97
6	11	3.4e-05	0.0056	18.4	1.1	1	23	371	393	371	393	0.97
7	11	9.8e-05	0.016	17.0	1.6	1	23	398	420	398	420	0.97
8	11	1.5e-05	0.0026	19.5	0.0	1	23	426	448	426	448	0.97
9	11	0.00012	0.02	16.7	0.1	2	23	460	481	459	481	0.96
10	11	2e-06	0.00033	22.3	2.0	1	23	547	569	547	569	0.97
11	11	3.2e-05	0.0054	18.5	4.6	1	23	579	601	579	601	0.97

Sequence Information

Coding Sequence: ATGTGTACCACTCCTGGGAATGCGGGTACAGGTTTCGGGTATGCTTGGTCCTTCGGACCGGGGACAGAGACCCGAGAGAACGCCCAAAGCGAACTCGCGACAAACATCAGTTACGCCGTCAACAATAATCAGGATCAAGGATCCAGTCAGAAGATACAAGTCGACATCAAGCCGACCAAGGTTACCGCTACCGCTCATCGTCGTCCGATGTTTGCGATGAACGAAAGTTGTCAGCAGACACCCACTACGCATCATGGCCATACAGGCGGAGCACACAATCAAACGACCCACGGCACTCACGTTCGCACTAAAAAGCACCACGACGTATTTTCATTAACGTGCGACAAAGGGGGATGTAATTGCGACGCGGCTCATCCTACACCTCCGCCTTCCTTGTTCTCAAACACCTTAGTTTTCACAACAGCCGACAAGCACGCCATGAGTAAGCACTTCATGACACCGATCGGGCCGTTGCAGCTTACGGCGGAAGAGTGCAATGAGATCTTGATGAAGAGAGCAGCTGCTGCGTCCAATCAAGCTAACGCGGCGAATAACGTTGCGACCAGTCAGACGGACAATACCGCTCACTTTGGCCATGTTTTGACCCATGTCAATACGACGCAAATCGAGACGAAAGTCAAACAGCAACAGGATATGGGAAGTCAGGTCCGTGTACCGAAAGAACGACCGTATTCTTGCTCGGAATGCGGAAAATCCTTTCTTCTCAAGCACCATCTTACCACACACGCGAGAGTACACACCGGCGAACGGCCACACATTTGCATTCATTGCGGCAAGAGTTTTGCGCACAAACATTGTCTTCATACGCATCTGCTCCTGCACAGCGCCGAGAGACCGTATCAATGTCGCGAATGTAAAAAGTCTTTCACGCTGAAACATCATCTTGTAACGCATACCCGCGTGCATACGCGGGAGCGGCCGTTTATCTGTCAGGAATGTGGAAGAGCATTTCCTCTAAAACGTCATTTAGTGACGCACAGCAAGTTCCACTCGGGGGAGAGACCTTACGTTTGCGAAGAATGCGGGGAATCGTTTTCGCAAAAGGATCATCTTACGATGCATTCGCGCTTCCATGGCAGCCTACATCCATTCGTTTGCCACGATTGCGGTGCAACTTTTCAGAGGAAGTTCGAGCTAGTTAATCACGGCCGGCTGCATGGCAGAGTACCACATTCGTGTACCGTCTGCGGAAAGGAATTTCTGCAGAAGCGAACACTTTTAGCTCATATGCGTTTACATACGGGCGAGACACCCTTCCCTTGTACCGTTTGCGGAGAAGCATTCCCTCGGAAAGCAGACCTGCTCGCTCATTCTAAGATTCACAACAATAATGCAAATACTGATGAAAAGTCCCTTACATGCAGgGAATGTGGGTTGGACTTCCCGAATCGAGAAGCTCTAAATTTGCACCAGAGGTTACATACTGGTGATCGAACACTTGTAACAGACCTTTGTGGATTAGCAGCCGCTTTTCAGCAAACTCCGGCACATTTCCTTGCCCCAAACACTCCAGGAGCACATCAGatgaACGGACCGATAGGAACGCCCGGTGTCAGTCATATGCATGGCGCGACGCAAACATCGCCACCAGTGGGTACAGGACCGAAACCTAAGCCACATATTTGTCCTGATTGCGGCCGCGGTTTCGCACAAAAACACGGCTTGTCGCAGCATCAACGACGTCACACGGATGGCAGTTGCCACATAAGATCACACGTATGTGACAAATGCGGCAAAGCCTTCTTCCAGAAGAATCATTTGTTATTACATCAACGTCAACATATGGATCCGCCACCAAGTATACTTAGACAACAACAGAGACAAGCTGCTCAAGCTGCGGCTCAGCAAgcacaacagcagcagcagcaacaagcgcaacaacaacagcagcagcaagttcagcagcagcagcaagtGCAACAACAAGTACAGCAGCAACCACAGCAACAGCCGCAAACGTGTACCGTCGATACAAAAACGATTCAACTACAGGCAATACAACAGCAGGTACAGCAACAGGTGCAACAACAGgtgcaacagcagcagcagcagcagcagcagcaacaacaacagcagcagcagcagcagcagcaacaacaacagacgcagcagcagcagcagcagcaaccaTGTTCGGTGGACGCTAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: MCTTPGNAGTGFGYAWSFGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPTKVTATAHRRPMFAMNESCQQTPTTHHGHTGGAHNQTTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHPTPPPSLFSNTLVFTTADKHAMSKHFMTPIGPLQLTAEECNEILMKRAAAASNQANAANNVATSQTDNTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFICQECGRAFPLKRHLVTHSKFHSGERPYVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFPCTVCGEAFPRKADLLAHSKIHNNNANTDEKSLTCRECGLDFPNREALNLHQRLHTGDRTLVTDLCGLAAAFQQTPAHFLAPNTPGAHQMNGPIGTPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQAQQQQQQQVQQQQQVQQQVQQQPQQQPQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQQQQQQQQQTQQQQQQQPCSVDAKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899020;
90% Identity: iTF_00684308;
80% Identity: -