Trug014169.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- -
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000189.1:144817-156297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.9e-05 0.0032 19.2 0.6 1 22 271 292 271 292 0.96 2 16 0.038 6.3 8.8 1.3 3 23 300 321 299 321 0.96 3 16 2.5e-06 0.00041 22.0 1.9 1 23 325 347 325 347 0.98 4 16 6.2e-05 0.01 17.6 1.1 1 23 352 374 352 374 0.98 5 16 0.0045 0.74 11.7 4.0 1 23 381 403 381 403 0.98 6 16 4.8e-05 0.008 17.9 1.5 1 23 418 440 418 440 0.98 7 16 0.0066 1.1 11.2 3.5 2 23 448 469 447 469 0.96 8 16 0.0011 0.19 13.6 2.2 2 23 475 497 474 497 0.96 9 16 0.77 1.3e+02 4.7 4.7 1 23 501 523 501 523 0.96 10 16 8.4e-06 0.0014 20.3 1.4 1 23 528 550 528 550 0.98 11 16 0.0032 0.53 12.2 3.0 2 23 558 579 557 579 0.96 12 16 0.0011 0.19 13.6 2.2 2 23 585 607 584 607 0.96 13 16 0.77 1.3e+02 4.7 4.7 1 23 611 633 611 633 0.96 14 16 1.9e-05 0.0031 19.2 1.1 1 23 638 660 638 660 0.98 15 16 4.8e-05 0.008 17.9 1.5 1 23 672 694 672 694 0.98 16 16 5.3e-06 0.00089 20.9 1.3 1 23 700 722 700 722 0.98
Sequence Information
- Coding Sequence
- ATGAGCTATTTTATCAACAAGGACGATGCTCTGCCGCAGCAAATTTGTGCGAGTTGTGTCGAGAAATTAGATTTTGTATGTGACTTTTACGACAGCTGTCACGTAATTCAGGAGAGATTATGGTGTCTTATTGAATCTTCGAAGAATCAACGCCAAGAGATTCAGAAACAGCCCGCTGACTATCAAACGAATAAAGGAGACGATCCGACGCAGGAAGGAGTAACTTTGGACACGGAATATTCGACAGAATATTCGAACATCATTATTAAAGAGGAATGCCTGCCAGATTTAAATTTGGAATTGTATCCTTCGAACCAAGAGATACAGAAACAGCCCACTGACTATCAAACGAATAAAGGAGACGATCCGACGCAGGAAGGAGTAACTTTGGACACGGAATATTCGATAGAATATTCGAACATCATTATTAAAGAGGAATGCCTGCCAGATTTAAATTTGGAATTGTATCCTTCGAACCAAGAGATACAGAAACAGCCCACTGACTATCAAACGAATAAAGGAGACGATCCGACGCAGGACGGAGTAACTTTGGGCACGGAATATTCGACAGAATATTCGAACATCATTATTAAAGAGGAATGCCTACCAGATTTAAATTTGGAATTGTATCCTTCGAACCAAGAGATACAGAAACAGCCCGCTGACTATCAAACGAATAAAGGAGACGATCTGACGCAGGAAGGAGTAACTTTGGGCACGAAATATTCGACAGAATATTCGAACATTAATAAAGAGGAATGCCTGCCAGATTTAAATTTGGAATCGCATCCTTCGAACAATCCAATGAACTTTCCTTGCGACACTTGCGGTAAGATTTTTCACTCGCAGGTGAAGTTGCGTGTACACATGCGTAGGTATAAAAGCAACAGTGTGGCATGTGAGATTTGCCGACGTCACTTACCGAGTAAAAAAGCCTTGGAGGAACATCATAAAATAGTGCACGTACATGATTATGTCTGCGATATATGTCGCAAGAAACTGAAAACTAAAAGGAATTTGAGGCGGCATATGATTAGTCACTTAGAGATCAAATTCAAGTGCCCGCAATGTCCGAATGTGTACAAAAGTAAGCGGTACTTGAATGAGCATCTGTTGAAGCACGAGGACATAAAAAAGAACTTTCCTTGCGACACTTGCGGTAAGATTTTTCACTCGCACATGAGGATGCGTATACACATGCAGAGGCATAAAAGTAACAGTGTGGCATGTGAGAGTCACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCGAATGTGTACAAAAGTAAACAGTACTTGAAAGAGCATCTGTTGAAGCACGAGGacataaaaaagAACATTCCTTGCGACACTTGCGGTAAGATGTTTCACTCGCACATGAGGATGCGTATACACATGCAGAGGCATAAAAGCAACAGTGTGGTATGTGAGATTTGCCGACGTCACTTATCGAGTAAAGAAGCCTTGGAAAAACATCACAAAACAGTGCATTTACATGATTATGTCTGCGATATATGTCACATGAAGCTGAAATCTAAACAGAAGTTGTACTGTCATATACTTAGTCACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCGAATGTGTACAAAAGTAAACAGAACTTGAATCAGCATCTGTTGAAGCACGAGGacataaaaaagAACATTCCTTGCGACACTTGCGGTAAGATGTTTCACTCGCACGTGAGGATGCGTATACACATGCAGAGGCATAAAAGCAACAGTGTGGTATGTGAGATTTGCCGACGTCACTTATCGAGTAAAGAAGCCTTGGAAAAACATCACAAAACAGTGCATTTACATGATTATGTCTGCGATATATGTCACATGAAGCTGAAATCTAAACAGAAGTTGTACTGTCATATACTTAGTCACTTAGAGAGCAAATTCAAGTGCCCGCAATGTCCGAATGTGTACAAAAGGAAAGAGTACTTGAAAGAGCATCTGTTGAAGCACGAGGACATAAAAAAGAGTCACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCGAATGTGTACAAAAGTAAACAGTACTTGAAAGAGCATCTGTTGAAGCACGAGGACATCCGTAAATATGAATGCTCTATCTGCAAAAAAATATTCGGTCACCGAACGCAACTCATTGCTCATCAGAAAGTGCACCCTGGGCCTAGGTAA
- Protein Sequence
- MSYFINKDDALPQQICASCVEKLDFVCDFYDSCHVIQERLWCLIESSKNQRQEIQKQPADYQTNKGDDPTQEGVTLDTEYSTEYSNIIIKEECLPDLNLELYPSNQEIQKQPTDYQTNKGDDPTQEGVTLDTEYSIEYSNIIIKEECLPDLNLELYPSNQEIQKQPTDYQTNKGDDPTQDGVTLGTEYSTEYSNIIIKEECLPDLNLELYPSNQEIQKQPADYQTNKGDDLTQEGVTLGTKYSTEYSNINKEECLPDLNLESHPSNNPMNFPCDTCGKIFHSQVKLRVHMRRYKSNSVACEICRRHLPSKKALEEHHKIVHVHDYVCDICRKKLKTKRNLRRHMISHLEIKFKCPQCPNVYKSKRYLNEHLLKHEDIKKNFPCDTCGKIFHSHMRMRIHMQRHKSNSVACESHLESKFKCPKCPNVYKSKQYLKEHLLKHEDIKKNIPCDTCGKMFHSHMRMRIHMQRHKSNSVVCEICRRHLSSKEALEKHHKTVHLHDYVCDICHMKLKSKQKLYCHILSHLESKFKCPKCPNVYKSKQNLNQHLLKHEDIKKNIPCDTCGKMFHSHVRMRIHMQRHKSNSVVCEICRRHLSSKEALEKHHKTVHLHDYVCDICHMKLKSKQKLYCHILSHLESKFKCPQCPNVYKRKEYLKEHLLKHEDIKKSHLESKFKCPKCPNVYKSKQYLKEHLLKHEDIRKYECSICKKIFGHRTQLIAHQKVHPGPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -