Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: clz9
Assembly: GCA_035220575.1
Location: JASTWL010001027.1:42705-51836[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-07 0.00015 22.7 0.0 8 39 239 270 237 274 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-07	0.00015	22.7	0.0	8	39	239	270	237	274	0.95

Sequence Information

Coding Sequence: ATGTACCATCGACTGAATTGTACGAATGGTAATCTCCCGAGATGCTATGGGCTGCCGAAAGTGCATAAACCTGGCCTCCCGTTACGCATTATTGTCTCGGCGTTGGGAAGTCCACTATACAACGTAGCAAAGCTCTTACAAATAAATGAGGATGAAATTCTCATCTCACTTGATGTTACTGCACTTTTCACGAACATTCCGAAAGATTTGGTACTTAAGGGAATAGAGAAAAGGTGGAGTCACATTTCGAAAAAAACAGACCTGaatttacaacaatttttatatgcTATTGACTTGATTCTATCCTCCACCAGCTTCAGTTTCAACGGTGCGATTTATGAACAGATTTTCGGCAGCCCCATGGAGTCTCCTTTGTCTCCAGATGTCTCTGACATTGTAATGGATGATTTGGAGACGCACTGCTTGAACGTGCTAGATTTCGATATCTCGATTTTTGTCAGATATGTTGATGACATCTTTGCGGTTGTCCCTAAACCTAAAGTTGACATAATACTAAGAGCATTTAATGACTATCATCCCAGATTGAAATTCACATATGAAACGGAAAAGGACGGGGCACTTAACTTTCTTGACACAACGGTGATCCGAAATGGCAATACTTTGATAACGAACTGGTACAGGAAACCTACATTTTCTGGACGACGCTGGCATCATGTCGAATACAAAAAAGTATGCAGAATCGTCGATAAAACTGCTCTCGATGCAGTAAGAATGGGCGTGCCTCTGAGGACTGCGAGTAAAATGCACAACGTTCCGAGAAGCACTCTCTATAACAAGCACAAACAAGGTGTTTCACAACTCGTCAAGAAGGGACCGTCTAGTATTCTGTCTGCGGAAGAAGAAAACCAGCTTGTCAAGTGGATCTTTCATGTCAGTGAAAAAGGTTTCCCGATATCCAAGGATCAGCTCTGTGACAGTGTTGCACGATTGGTTGTGAGACTCAAACGACCAACGCCGTTCAAAGAGAATCGTCCCGGCCGTCATTGGTACGAGGCGTTTCTCCGTCGTTACCCGGAACTTAGCCGAAGAATAGCTCAAAATCTGAGTTACAGTCGCGCTTCGGCGACGGAAGAAAGACTCAGAAATTGGTTCGCCGAGGTCGAGAGCTACTTAACAACGCAGAATTTGTTGAATATTGATCCCTCGAGAGTTTACAATTGCGACGAGAGTGCATTCTTCCTATGTCCGAAGGCCGAGAATGTGATTGCAAGAAAAGGTGCGAGATCGGTTTATAAAGTCGACAATGGGGATGAGAAGGAGTGCCTCACCGTTCTCTTTATGGTTAACGCGGCGGGTGTAATGGCCCCACCAATGGTGATGTATTGGTACCAGAGAATTCCGGCGAGCGTAGCTCAAAACGTCCCTAAAGGTTGGAGCATCGGTACATCGGAAAGGGGGTGGATGACCGCCGAGACGTTTTACGAATATATCGCAAACGTTTTTTATCCATGGTTGAAAGAAAATAATGTCGAGTTTCCCGTCGTTCTTTATGTCGACGGCCATTCTTCGCATTGTACGATGCCTCTGAGCGAGTTCTGCAGGGATCATCAAATCGAACTGATCGCATTGTACTCGAATGCTACGCATATTTTGCAGCCCCTGGATGTCGCGGTATTTCACCCGCTGAAATCGTCATGGAAAAAAACAGTCAACAAGTGGAGACTTGACCACGACGGAGATCGTCTAACAAAAGGCAATTTTGCGCCAGTGCTGAAAACTGCAATCGACAGCATGGATCTCACGGGAACAATTATTCGAGGCTTCGCGTCTTGTGGATTGTTCCCGTTTTCGGCAAATGCCGTCGATTTTGATGTGCTTAGAAAAGGTTTAAAGGAACGAAAATCCAAGGAAGACAACGAAGTCGAGAGTCAGGCGGAGTTTCTGAAATTCTTCGAAGACCGGCTACCAGCCGGTCTGCTACCAGAGTTTATCGAATCGAAGCGTATTGGTTTTTGGAGAGGCGCGGTAGAAAATCGAGGACTTTTTGCGTTTTGGTTGCAAATGAAGGGAGTCACTGGCTACGAAAAAATGAGTGTAGATTCGGGCACAATCGACGATGCAACGGTACCGAGCGACGATCAAAAGTTAGAGGACGCCGAGAGAACGACGGCCGAAGACGGTAGAGGAACCCCGACGGATTGCGCTGCAATAATTACGGCAAATGAGAGTCTGAGTTTGGGGGCAGATCAAAGCATTGTTGTGCTGGTCGAACACGATGGGACTCTGGCAACGATCAATCTCGACAAAAATAGCGGCGCTGGTCAATCATTCGGCGACGCAATCGAAATCGAATGCGCAACTGACCCCTTGGAGACCGAACAATTTGTTTCGGAAAATGAACCAGGCGCAGCAGGCGTGAGACTCGACAGCAGAGCCCCCGAAGGTACTCCAGATCCGTTCAAAGATGCCCTATTTTGGCCCCCGGATCTTCCAAACAAAAAAAGGAAGAGGCCCCTCAATGGTCCCAAGCCTCCCACTGTGGCTACTTCCGATAAGTGGGTGGAAtacgaaaaatTCCTCCGTATAGTACGAACGACGTCCAGGCAGGTCGAGGCAACACCGGACCGGGCAGGGGGACAAGCGGAGGAGCCACTAACGCCTTTCGAGGCGCGCACTACCGCCACGGCGGTCAGGGACTCGAGCGGAGACTCGGGTTCGGAGGATGGTGACCTCCGATAG
Protein Sequence: MYHRLNCTNGNLPRCYGLPKVHKPGLPLRIIVSALGSPLYNVAKLLQINEDEILISLDVTALFTNIPKDLVLKGIEKRWSHISKKTDLNLQQFLYAIDLILSSTSFSFNGAIYEQIFGSPMESPLSPDVSDIVMDDLETHCLNVLDFDISIFVRYVDDIFAVVPKPKVDIILRAFNDYHPRLKFTYETEKDGALNFLDTTVIRNGNTLITNWYRKPTFSGRRWHHVEYKKVCRIVDKTALDAVRMGVPLRTASKMHNVPRSTLYNKHKQGVSQLVKKGPSSILSAEEENQLVKWIFHVSEKGFPISKDQLCDSVARLVVRLKRPTPFKENRPGRHWYEAFLRRYPELSRRIAQNLSYSRASATEERLRNWFAEVESYLTTQNLLNIDPSRVYNCDESAFFLCPKAENVIARKGARSVYKVDNGDEKECLTVLFMVNAAGVMAPPMVMYWYQRIPASVAQNVPKGWSIGTSERGWMTAETFYEYIANVFYPWLKENNVEFPVVLYVDGHSSHCTMPLSEFCRDHQIELIALYSNATHILQPLDVAVFHPLKSSWKKTVNKWRLDHDGDRLTKGNFAPVLKTAIDSMDLTGTIIRGFASCGLFPFSANAVDFDVLRKGLKERKSKEDNEVESQAEFLKFFEDRLPAGLLPEFIESKRIGFWRGAVENRGLFAFWLQMKGVTGYEKMSVDSGTIDDATVPSDDQKLEDAERTTAEDGRGTPTDCAAIITANESLSLGADQSIVVLVEHDGTLATINLDKNSGAGQSFGDAIEIECATDPLETEQFVSENEPGAAGVRLDSRAPEGTPDPFKDALFWPPDLPNKKRKRPLNGPKPPTVATSDKWVEYEKFLRIVRTTSRQVEATPDRAGGQAEEPLTPFEARTTATAVRDSSGDSGSEDGDLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -