Trug020256.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- -
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000356.1:135775-136164[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-10 3.5e-07 31.2 0.0 2 43 14 55 13 57 0.91 2 2 4.1 4.3e+03 -1.1 0.0 12 22 87 97 86 98 0.84
Sequence Information
- Coding Sequence
- atggtacgcacgtttcgtcgcaaaacgactcccgttgacaaggagcaactcaagaaggcagttcttgcggtgagaaaagataaaatgagcgtttccgcagccgcaaaacaattcgatgtccggagaagcacgttgaacgacttgaaaaaaaatgccacacaaacagaaccgcagccttcgacgagcagtgggcgtaaatcgaaatcaagaaagcagcagcggtcggattctgacaaagacttggataatacgtgctgcgtgtgctcagagaagttaacaataaacagagcatatgggaaacagtgcattgcgtgcgagcgtagggcacacaacacatgcgtgcgcttgtcaggatctgtattcacgtgcctaaattgttttatggaataa
- Protein Sequence
- MVRTFRRKTTPVDKEQLKKAVLAVRKDKMSVSAAAKQFDVRRSTLNDLKKNATQTEPQPSTSSGRKSKSRKQQRSDSDKDLDNTCCVCSEKLTINRAYGKQCIACERRAHNTCVRLSGSVFTCLNCFME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -