Trug012174.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- -
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000149.1:239800-241314[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-10 7.3e-07 30.2 0.0 1 39 14 52 14 54 0.92 2 2 0.38 4.1e+02 2.2 0.1 14 25 55 66 50 66 0.84
Sequence Information
- Coding Sequence
- atggCACGAAATTACAAGAAGACTGAAATGCAGAGCTGGTCTGAGGAAAACATGGCTGCAGCAATAGAAGATGTTGTGAAGAAGAAAATAAGCGGGAGACGTGCTGCTGCTTTCCATAAGGTTCCTGAATCTACTCTGTGCCGTAAGATAAGGGAAGCTAAAAGGGGAGGTCTGTCTTTTTCAGAAGCTGctcagaaaaaatttttaggcCGTTATAAAACTTTCTCAGAGGCTCAAGAAGAGGAATTTGTGAAAGAAATATTgcttttaaaaaaaagtttatttggCCTTACTTCAACAGATATACGGAAACTCGCATTTGAATTTGCTGAAAAGAACAACATTCCGCATATGTTCAACAAGGAAAGGGAAAGAGCAGGGGAAACATGGCTCCGCTTTTTCTTCAGCAGGCATAAGCAATTATCGCAAAAAGATTTTGTAGAAACTTCTCCTGCAAGCGCGAAGGGTTCTTACCGTACAGCAGTACAATCATTTTTTGATTCATTAGAgtctgtttataataaatacaaattctTACCTAATGACATTTATAATGTCAATGAAACGGACATTATAATAAAGCCAAACGAAGTGTCAAAAGTACTAGCTCTGCATAGAGAACAGCAAGTTGGCTTCTTATCTTCCAGTGTAAAAGTTCTCGTTACTGCTGAGATATGTGTGAATGCTGCTGGTGATTACATGCCAACAATGTTAATTTTCCCCATGAAAGGAGTAAGAAGCTCTGAGTTGGTGGATGACTCTTCTCCCAACTCATTTACCGTCTATCACGAGAGTGGATCGATTCAGAAAGACAGTTTTATTATTTGGTTCAAAAAATTCATTAAGTTTTCTTGCCCCTCACCTGAAAAGCCGGTGCTTTTGCTTCTAGATGGACACGCTTCTCATACCAAAAATGTGGAACTTATCAAACTTGCACAAGAAAACAACGTCATCATCTTGTCCTTCCCTCCGCATTGGTTGCAGCCACTTGACGTATCATTCATAACTTGTTTGATGACATATTATAAACAAGTGGTGCAAAAATGGAAAGTTCATCACCCAGGACAAAATGTACCAATACATAAAGTGGAGACACTATTCAAAGAGGCTTTTCCTACAGCAGCTAAAAAACAAACTGCTATAGAAGGTTTTGAAAAATCGGGAATATACCCATTGAATAGAGACATGTTTGCTGATCTTAATACTCCATCAAAAACCACTAATAAACCTATGCAGCAGGAAATTCAAGATGATGAGTCCCGCTCTGTGATCTCTGGAAATGATGAAGCCGACCCGTTCTCATCTGCAATTTTCTCGAATTTCTCTCCCcaaaaagaaaatgatattcAGAacagaaacaaaaaaagaaaaaaaactgcCATCCTGACTTCGTCTCCCTGCAAAAAGCAGGAAATGGAGACTGCCACTCGGAAAAGGAAGTTAGAAACAGAAGCCCCTaaagttgaaaaattaaataagaaaaaaaagcagaTAGACAGCTCATCCTCAGATTAG
- Protein Sequence
- MARNYKKTEMQSWSEENMAAAIEDVVKKKISGRRAAAFHKVPESTLCRKIREAKRGGLSFSEAAQKKFLGRYKTFSEAQEEEFVKEILLLKKSLFGLTSTDIRKLAFEFAEKNNIPHMFNKERERAGETWLRFFFSRHKQLSQKDFVETSPASAKGSYRTAVQSFFDSLESVYNKYKFLPNDIYNVNETDIIIKPNEVSKVLALHREQQVGFLSSSVKVLVTAEICVNAAGDYMPTMLIFPMKGVRSSELVDDSSPNSFTVYHESGSIQKDSFIIWFKKFIKFSCPSPEKPVLLLLDGHASHTKNVELIKLAQENNVIILSFPPHWLQPLDVSFITCLMTYYKQVVQKWKVHHPGQNVPIHKVETLFKEAFPTAAKKQTAIEGFEKSGIYPLNRDMFADLNTPSKTTNKPMQQEIQDDESRSVISGNDEADPFSSAIFSNFSPQKENDIQNRNKKRKKTAILTSSPCKKQEMETATRKRKLETEAPKVEKLNKKKKQIDSSSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408104;
- 90% Identity
- iTF_01408116;
- 80% Identity
- -