Tnyl007795.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000056.1:2728449-2736127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00014 0.021 16.5 1.5 1 23 26 50 26 50 0.97 2 12 0.00048 0.075 14.8 1.5 1 23 57 80 57 80 0.95 3 12 0.17 27 6.8 0.1 1 21 115 137 115 138 0.95 4 12 0.00066 0.1 14.4 5.2 1 23 146 169 146 169 0.95 5 12 0.1 16 7.4 0.1 1 21 195 217 195 218 0.95 6 12 9.9e-06 0.0015 20.1 2.3 1 23 226 249 226 249 0.98 7 12 0.57 89 5.1 0.2 1 21 288 310 288 311 0.94 8 12 1.1 1.7e+02 4.2 7.6 1 21 319 339 319 342 0.95 9 12 0.0042 0.66 11.8 0.3 1 21 377 399 377 400 0.95 10 12 0.098 15 7.5 4.7 1 20 408 427 408 431 0.90 11 12 0.004 0.62 11.9 0.2 1 23 469 493 469 493 0.96 12 12 0.00017 0.027 16.2 3.2 1 23 500 523 500 523 0.97
Sequence Information
- Coding Sequence
- ATGCGGGATAACAAGAAATCCACGATCTGTCTTCGCAAGAGGACCAAGAACACCAAGAAAATGAGGTGCGTCAAGTTTTCGTGTCCTAATCCGAATTGCCAGAGCACCTTCGGGTTCAAAAGCAACCTGCGGAAACATCTTCGCTACCACTGCGGCCAGAAGCCGAGGTTCAAGTGTCCCTACTGCGACTACATAAGCAAGAAGAGGACCAACGTAAGGAGGCACGTTCAGGGCAAACATAAGAACCGCTATGTCTATGTCATCGATATTGTTCGGAATGTTGTTTATAGCAAAATACTCACGGCTTATCTTTGCAAAAAGAGAACACGAAGAAGCGTCAAGTTTTCGTGTCCTAATCCAAATTGCCGGATAGTCTTTGGGTGGAAACAGAGTCTGCAGAGACATCTTCGCTACCAATGCGGCCAGAAGCCCAGGTTCAAGTGTCCCTACTGCCACTACATGTGCAAGCGCAAAGCCGACGTAAAAAATCACATTGGGCGCAAGCATAAGAACCataGCAAAAAACCCACGACCTATCTTCGCAAGAGGACTAAGAACACCAGGAAAAAGAAGAGCGTCAAGTTTTCGTGTCCTAATCCAAATTGCCGGATAGTCTTTGGGTGGAAAGAGAGTCTGCAGAGACATCTTCGCTACGAATGCGGCCAGAAGCCCAGGTTCAAGTGTCCTTACTGCGACTACGTATGCAAGTTGAATGCCAACGTAAAGAGACACATTCGGCGCTTGCATAAGAACGGCTATGTCTATGTCATCGATATTGAGCGGAATGTTGTTTATAACAAAGAATCGACGACCTATCGTCACAAGGGGACTAAGAAGACCAGGAAAAAGAGGTGCGCCAAGTTTCCGTGTCCTAATTCGAATTGCCAGAGCACCTTCGGGTGGAAAGAGAGTCTGCGGAACCATCTTCGCTACGAATGCGGCAAGAAGCCTAGGTTCAAGTGTCCCTACTGCGACTACATATGCAAGTGCAAGGCCAGCATAAGGAGGCACATTCGGTGCATGCATAAGAATCGATATGTCTATGTCATCGATATTAAGCAGGATGTTGTTTGTAGCAAAATACTCATGGCTTATCTTTGCAAAAAGAGAACACGAAGAAGCGTCAAGTTTTCGTGTCCTAATCCGAATTGCCGGAACGCCTTCGAGTACAAAGGCAGCCTGCAGAGACATCTTCGCTACGAATGCGGCCAGAAACCCAGGTTCAAGTGTCCCTACTGCGACTACGTATGCAAGTGCAAGGGAAGCGTAACGAGGCACATTCCAACCAAGCATAAGAATTGTTCCGTCTATGTTATCGATATTGAGCGGAATGTCGTTTataacaAAGAACCCACGACCTATCTTCACAAGAAGATCAAGAACATGAAAATGAGATACGCCAAGTTTCCGTGTCCTAATCCGAATTGCCAGAGCGGCTTCGGGTTGAAAAGCAACCTGCAGACCCACGTTCGTTACCACTGCGGCCAGAAGCCGAGGTTCAAGTGTCCCTACTGCGACTACATATGCAAGTTCAAGGCCGATGTAAAGAAACACATTCAATCCAGGCATCAGAACTGCTATGTCTATGTCATCGATATTGAGCGGAATGTTGTTTGTTAG
- Protein Sequence
- MRDNKKSTICLRKRTKNTKKMRCVKFSCPNPNCQSTFGFKSNLRKHLRYHCGQKPRFKCPYCDYISKKRTNVRRHVQGKHKNRYVYVIDIVRNVVYSKILTAYLCKKRTRRSVKFSCPNPNCRIVFGWKQSLQRHLRYQCGQKPRFKCPYCHYMCKRKADVKNHIGRKHKNHSKKPTTYLRKRTKNTRKKKSVKFSCPNPNCRIVFGWKESLQRHLRYECGQKPRFKCPYCDYVCKLNANVKRHIRRLHKNGYVYVIDIERNVVYNKESTTYRHKGTKKTRKKRCAKFPCPNSNCQSTFGWKESLRNHLRYECGKKPRFKCPYCDYICKCKASIRRHIRCMHKNRYVYVIDIKQDVVCSKILMAYLCKKRTRRSVKFSCPNPNCRNAFEYKGSLQRHLRYECGQKPRFKCPYCDYVCKCKGSVTRHIPTKHKNCSVYVIDIERNVVYNKEPTTYLHKKIKNMKMRYAKFPCPNPNCQSGFGLKSNLQTHVRYHCGQKPRFKCPYCDYICKFKADVKKHIQSRHQNCYVYVIDIERNVVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -