Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000056.1:2948868-2950808[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 1.8 10.4 0.2 1 23 239 262 239 262 0.92

2 10 8.3e-06 0.0013 20.3 3.3 1 23 268 290 268 290 0.99

3 10 5.7e-07 8.8e-05 24.0 0.5 1 23 296 318 296 318 0.99

4 10 0.33 51 5.9 5.2 1 23 324 346 324 346 0.97

5 10 9.2e-06 0.0014 20.2 0.3 1 20 352 371 352 372 0.96

6 10 0.018 2.9 9.8 2.4 1 23 381 401 381 401 0.94

7 10 1.5e-06 0.00023 22.7 0.5 3 23 409 429 408 429 0.98

8 10 0.00015 0.023 16.4 1.4 1 23 435 457 435 457 0.98

9 10 0.00059 0.093 14.5 4.3 1 21 463 483 463 486 0.96

10 10 0.073 11 7.9 4.0 3 23 494 515 492 515 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	1.8	10.4	0.2	1	23	239	262	239	262	0.92
2	10	8.3e-06	0.0013	20.3	3.3	1	23	268	290	268	290	0.99
3	10	5.7e-07	8.8e-05	24.0	0.5	1	23	296	318	296	318	0.99
4	10	0.33	51	5.9	5.2	1	23	324	346	324	346	0.97
5	10	9.2e-06	0.0014	20.2	0.3	1	20	352	371	352	372	0.96
6	10	0.018	2.9	9.8	2.4	1	23	381	401	381	401	0.94
7	10	1.5e-06	0.00023	22.7	0.5	3	23	409	429	408	429	0.98
8	10	0.00015	0.023	16.4	1.4	1	23	435	457	435	457	0.98
9	10	0.00059	0.093	14.5	4.3	1	21	463	483	463	486	0.96
10	10	0.073	11	7.9	4.0	3	23	494	515	492	515	0.97

Sequence Information

Coding Sequence: ATGATTAGCATGCAGGACTATTTTGAACAGCTAATCTTGAACAATCTAACCGGATCCGACCAGCCGCAGGAGGAAGTTCAGCTGACCGAATTGCGGCCGGTGAAGCAATCGCGCATCAGAGAAAATGTCAAGGATACGGACGTGACCGACGCTCTGAGGGCGCTCAGGAGTCTTTCGGGCGACTGCGACGATGGCGAGAGCTTTGATCAACGAGAGTTCAATTCCTGCAAGAGCGTCGAGCAATCGGAACACCAGGGTGGCAAGCTTCAACGAGTGGAGGCTTATCGGAAAAAAACGGAAGACATCAGGAAAGATGGTAAACGGAATGCTGAGGTGACGGTGGAGCTAGTATGTAATGACAAGAAGATCGCTCACGTGAAAGCACCGAGGAGGAAGCTGGTGAAGTCGAGCAAGAAAGACCGAGAGAAGCCAGATGGAGATGGTATTACTGAAAAAGAGAATCCCGAAAAGGAGCTCAGATTAAGGATCGACGCCATCATTCAAGCGAATTACTTACTGGAGCGCGAGAACGTTGTCGAGGAACTCGAAATTGTGGAGCATACTGACACTCCCTCCGCTGCCGCCTCGACAAAACCCTCTGCGAAAAACGCAGAGAATAGCGATAGCTCCGTGTGTAATTCGGTGGAAGAAGAGGAGACGACGAGGAAGACGAGGAATCGGACCTATAAGATCAGACAGGATCTACAGAAGAAGTATTTCTGCATCATATGCGACGCGCGCTTCAAAGGTAGCGGTGGTCTGCGGAATCACTACAAAGTGGTGCACGACACTGGACCGGTGTTCAAGTGCCACGACTGCGGCAAGGAGTTTAAGCTGAAGGAGCGATTGAAGCTGCACGTGCGCATGCACACCGGCTTCAAGCCGTACAAGTGTTCGGACTGCGACAAGGCGTTCGCGCGGGGTGGCCAGCTGTTGCAGCATCGTCGCACGCACACCCAGGTCAGACCGTTCCACTGCGAGCTGTGCTCCACCACCTTCACGTGCATGGCCAATCTGTCGCTACATCTGAAACGTCACACCGGCCAGAAGGATCACAAGTGCGAGTTGTGCGGACGCGCCTTCGTGCGTCGCGACGCCCTGAAGAAACATCTGGAGTGCCTGCACCGCGACGTCAAGTCCTTCCTCTGCGGGATCTGCAACAAGACCTTCAAGGGTCACCTGCCGCAGCACATGAGGACACACGCGAAGGACCGTCCGCACGGCTGTGCCACGTGCGGCCAGCGATTCGCCCAGAAGTCCCAGCTGACCGTACACCAGAGGACCCATTCCGGCCAGCGACCATTTCGTTGCCTGGTCTGCTGGCAGGCCTTCGCCCATTCGACCGCCCTGAAGCTGCACACCCGACGACACACCGGAGAACGGCCGTTCAAGTGTACCGACTGCAATACCGGTTTCACTCAACTGCCACATTGGAAGAAGCATATGAAGTGCGTACACGGCAGAGACAATCCGTATGGCTGCAAGCGTTGCAAGAACTTTTTCAGAATTAAGAGCGATCTGGAGAACCACGAGAAGACTTGTCATCCAGAGGCAGAGGAGGAGGATGACGATGGCAGCGTTTCCAGTAAACCGGCCAGCGGCTCCGAGATCGTCGAGAAGACCTCTGTCACCGCGAAGTACAAGATGATGACGGTGGAGAAGATGCGGCTGCTACTGGCGGTCCTCCTGAAGAGGATCAGTAAGCAGGAACGGTTGGACGAGCTCGGCTTCGGCAAACGTCTCATCGACGACGTTCTTCAGGACTCCCTGGTGTCCGCTGGCAAGGAACCGGTCACGGGGAGCGGCTTGTCCGAACTTGAGGCTCTCACCCGGAATCTAGAAATCTTCCTGGAATGGACAGTGCCGAAGGAGCACTTGGAGACTTTCCGTAAAATGAAAAAGTCACCCGAAGATATTTTGGAAACGCTCACAGCTACGTAA
Protein Sequence: MISMQDYFEQLILNNLTGSDQPQEEVQLTELRPVKQSRIRENVKDTDVTDALRALRSLSGDCDDGESFDQREFNSCKSVEQSEHQGGKLQRVEAYRKKTEDIRKDGKRNAEVTVELVCNDKKIAHVKAPRRKLVKSSKKDREKPDGDGITEKENPEKELRLRIDAIIQANYLLERENVVEELEIVEHTDTPSAAASTKPSAKNAENSDSSVCNSVEEEETTRKTRNRTYKIRQDLQKKYFCIICDARFKGSGGLRNHYKVVHDTGPVFKCHDCGKEFKLKERLKLHVRMHTGFKPYKCSDCDKAFARGGQLLQHRRTHTQVRPFHCELCSTTFTCMANLSLHLKRHTGQKDHKCELCGRAFVRRDALKKHLECLHRDVKSFLCGICNKTFKGHLPQHMRTHAKDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCTDCNTGFTQLPHWKKHMKCVHGRDNPYGCKRCKNFFRIKSDLENHEKTCHPEAEEEDDDGSVSSKPASGSEIVEKTSVTAKYKMMTVEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLVSAGKEPVTGSGLSELEALTRNLEIFLEWTVPKEHLETFRKMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01409430;
90% Identity: iTF_01408509;
80% Identity: -