Tnyl034792.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010001013.1:19138-29274[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.9e-06 0.00093 20.8 1.2 1 23 305 327 305 327 0.98 2 11 4.1e-05 0.0064 18.2 1.2 1 23 334 356 334 356 0.98 3 11 0.0061 0.95 11.3 2.5 3 23 363 384 362 384 0.97 4 11 0.0015 0.23 13.3 0.5 1 23 388 410 388 410 0.98 5 11 1.3e-05 0.002 19.8 2.5 1 23 415 437 415 437 0.98 6 11 0.00015 0.023 16.4 1.1 1 23 444 466 444 466 0.98 7 11 0.0061 0.95 11.3 2.5 3 23 473 494 472 494 0.97 8 11 2 3e+02 3.4 0.6 1 9 498 506 498 509 0.91 9 11 1.1e-05 0.0017 20.0 2.6 1 23 513 535 513 535 0.98 10 11 0.00094 0.15 13.9 0.8 1 23 547 569 547 569 0.98 11 11 3.7e-06 0.00058 21.4 5.7 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- ATGGACGTGGAAGAGGGTGAGGCGAAAATGTGCAGGCTATGCGGCCAGTACGAGAAGATCTACATCGGCGTGTTCGAGGAGGAGGGTGTCAGACGCTACCTCGGCACGAAGATACACAAGATCAACATCCTGATAGATGAGAAGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGCCGCTCTACTGCTCTTTTATCATGCTatCCACAAGGACGATGCTCTGCCGCAACAAATTTGTGCGAGTTGTGTCGACAAATTAGATTTTGTATGTGACTTTTACGACAGCTGTCATGTAATTCAGGAGAGATTATGGTGGCTTATTGAATCTTCGAAGAATCAACGCCAAGAGATACAGAAACAGCCCGCTGACTATCAAACGAATGAAGGAGACGATCCGACGCAGGAAGGAGTAACTTTGGGCACGGAATATTCGACAGAATATTCGAACATCATTATTAAAGAGGAATGCCTGCCAGATTTAAATTTGGAATTGTATCCTTCGAACCAAGGGACACAGAAACAGCCCGCTGGTTATCAAACGAATAAAGGAGACGATCCGACGCAGGAAGAAGTAACTTTGGGCACCGAATATTCGACAGAATATtctaacattattaataaaaaggaatgCCTGCCAGATTTAAATTTGGATATGTATCCTTCGAACCAAGAGACACGGGAACAGCCCGCTAGCTATCAAACGAATAAAGGAGACGATCCGATGCAGGAAGGAGTAACTTTGGGCACGGAATATTCGACAGAATATTcgaacattattattaaagaggAATGCCTGCCAGATTTAAATTTGGAATTGTATCCTTCGAACCAAGAGACACAGAAACAGCCCGCTAGCTATCAAACGAATAAAGGAGACAATCCGATGCAGAGTGACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCAAATGTGTACAAACGTAAACAGAACTTGAATGAGCATCTGTTGAAGCACGAGGACATAAAAaagaACTTTCCTTGCGACACTTGCGGTGAGATTTTTAACTCGCACGTGAAGATGCGTATACACATGCGTAGGCATAAAAGTAACAGTGTGGCATGTGAGATTTGCCGATATCACTTATCGAGTAAAGAAGCCTTGGAAAGACATCACAAAAAAGTGCATTTACATGATTATGTCTGCGATATATGCCACAAGAAAGTGATATCTAAAAAGATATTGCGCGCTCatataattAGTCACTTAGAGAGTAAATTCAAGTGCCCGAAATGTCCGAATGTGTACAAAAGTAAACATAACTTGAATGAGCATCTGTTGAAGCACGAGGGCATAAAAaagaACTTTCCTTGCGACACTTGCGGTGAGATTTTTAACTCGCACGTGAGGATGCGTATACACATGCGTAGGCATAAAAGTAACAGTGTGGCATGTGAGATTTGCCGATATCACTTATCGAGTAAAGAAGCCTTGGAAAGACATCACAAAAAAGTGCATTTACATGATTATGTCTGCGATATATGCCACAAGAAAAGTCACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCAAATGTGTACAAACAGAAACATAACTTGAATGAGCATCTGTTGAAGCACGAGGACATAAAAAagAGTCACCTAGAGAGCAAATTCAAGTGCCCGAAATGTCCGAATGTGTACAAATGGAAACGGAATCTGAATGAGCATCTGTTGAAGCACGAGGGCATCTGTAAATATGAATGCTCTATCTGCAAAAAAACGTACGGTCATCGATCGCACCTCACTCGTCATCAGAAAGTGCACTCTGAGCCTAGgtaa
- Protein Sequence
- MDVEEGEAKMCRLCGQYEKIYIGVFEEEGVRRYLGTKIHKINILIDEKDPLPKAICVQCLAALLLFYHAIHKDDALPQQICASCVDKLDFVCDFYDSCHVIQERLWWLIESSKNQRQEIQKQPADYQTNEGDDPTQEGVTLGTEYSTEYSNIIIKEECLPDLNLELYPSNQGTQKQPAGYQTNKGDDPTQEEVTLGTEYSTEYSNIINKKECLPDLNLDMYPSNQETREQPASYQTNKGDDPMQEGVTLGTEYSTEYSNIIIKEECLPDLNLELYPSNQETQKQPASYQTNKGDNPMQSDLESKFKCPKCPNVYKRKQNLNEHLLKHEDIKKNFPCDTCGEIFNSHVKMRIHMRRHKSNSVACEICRYHLSSKEALERHHKKVHLHDYVCDICHKKVISKKILRAHIISHLESKFKCPKCPNVYKSKHNLNEHLLKHEGIKKNFPCDTCGEIFNSHVRMRIHMRRHKSNSVACEICRYHLSSKEALERHHKKVHLHDYVCDICHKKSHLESKFKCPKCPNVYKQKHNLNEHLLKHEDIKKSHLESKFKCPKCPNVYKWKRNLNEHLLKHEGICKYECSICKKTYGHRSHLTRHQKVHSEPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -