Tnyl008961.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000070.1:255845-259043[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.044 6.8 8.6 0.2 3 23 452 474 451 474 0.94 2 10 0.0026 0.4 12.5 1.4 1 23 480 504 480 504 0.98 3 10 0.00024 0.037 15.7 0.2 1 23 510 534 510 534 0.97 4 10 8.5e-05 0.013 17.2 0.1 3 23 542 564 540 564 0.93 5 10 7.4e-05 0.012 17.4 1.7 1 23 571 595 571 595 0.97 6 10 0.00011 0.017 16.8 0.6 2 23 603 626 602 626 0.95 7 10 5.4e-06 0.00084 20.9 2.0 1 23 632 656 632 656 0.98 8 10 5.6e-06 0.00088 20.9 0.5 1 23 662 686 662 686 0.97 9 10 0.0004 0.062 15.1 2.1 1 23 692 714 692 714 0.98 10 10 0.092 14 7.6 0.8 1 23 792 817 792 817 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCAGAGGAGCCGCCGTCGCCGCTTGCACGTCGAGACGACACAGTCGTGAGAGGATCAGCTCCGAGGGCGAGGAAGCGGAATGCGCGCCCGCCAACGGGCTTTTCGCGTCGTCGAGAACGGAGGAGGTCGGTAAGAAGGACCGAAGGACCAGAAAAAATGAGTGTTGGCACCAGACGGCGCCTGGAAAGGGCGTCGATGTCGTGGAGACGGTAGCCGACTTTGAGAAATGGCTCAAGATGCGTAGCACGGAGCCGCCGGTGCCGTCGAGCATCGACCTGGACGCAGCCAAAATGGTGGAGGGCGTAGACCGGTATCTGGGCGAGGAGGTGCTGTCGCATAGCTGCTTCCTGAGTAAAGATCCATATGGCTTGTCCATCGACATCGATCTAGCAGACGCCAAGAAGCTCAACCTGTCATCGAGCTACGATCCGATACTACAGGATCTGACGCACAGCGAGAACCGGCTACTGGAACCACCGTGCGAGAAGGTCGTCGACGAGTTTATGCTACCGGAGTTCCAGCTGGATCATTTGGATCCATTGGCAGCGCTCACCCCGGATGACATGATGGTGGCCGGTGAGATTCTGCCGTCCGCGAACAGCCAACCAACGTTAAGCGTGGAGAGTCAAGATGTCgtacaaaatatttccaaaacAGAAATTCCAACGCAGAACAATGAGATCCCGTGCGAGAAATCCACGCAGGTTACTCTCAATCAGCTACCAGTGAATTTAGTCGCGAACGAGATGGAAGATGCAAGGACAGAACAGGAAACTATAGCACAATCTTCGGCAAGTTCCTCGGAGCTCTTCATCGAGGCTCTACCGCCGATGGAGGAGAGCTCGACGAATACCATGGCGAATCCCATGGAAGTAGCCACGCAAGGCATGGTAATAGAACAATTGAAAAGGACGAAACTCGAACCTCGTATCATCAAGAAACGTCGACAGATGATGGAGCGATTGGAGAAGAAGCTCGACAAGCATATCAACGGCAAGAGCTTTGCCGTTGATGCGGACTCGCAGGACGGCATGATGGCTGTGGTTGCTATATCCACTGACAAGATCTCCAACATGACACAGATCGTTATCAATACTGGCACAGAGAAACAAATCTATCAAGGCAAAACCTCAGAATTGATCGAGGCGACAGGCAACTTCCCAAAATTGCCCAAGATAGATACTTCCGCCGCGGTTTGGAATGGCACGGTTGAGTATGGTACCGATAATCCGAGTAATCCGAGTAGTCAATATGAAATTGTTATATCCAATGCATTGGAGGAACTAGGCATCACCGACGACAGCCTGCAGCCCTTGTGCGCCACTGAACACGACAAGGTGTGGCTCTGCCCACGAGAAGGCTGTAACAGACAGTTCGGCAGATTGTACACTCTGAAAGGTCATTTGTTGGCCCACTATGGAGTTAGACCGTTTAAGTGCGACTTCGAGGGCTGCACTTGGGCCTTTTATTCCGAGTTCAAGCTGAAAAGACACAAGGAGACGCATCTGAAGCGCAAGGATTACGTGTGCGAGGTGGAAGGCTGCAATCGTCGTTTCACTACCGTCTACAATCTGTGGAGCCACGCGAAATTGCACAGTCGTCCTAATCGGATCGTTTGCCAGGTGCCAGACTGCGGCGAGAAGTTTCAAACGAAACGAGCATTGGAAGTACATATGAAATCACACGACCAACGCCATGCACCTTACGTATGTCAGCACGAGGGTTGTGGCAAACGTTACTACAGTAGCAACGCATTGACGTCACATCAGCGATCACATAGCTACAAGGAAGTGGACATCAAATGCTCGTGGCCGGGCTGCGGCAAGATTTTCGACAAGCCATGTCGACTCAAAGCCCATATGCGTTCTCACACCGGCTACAAGCCCTATCCTTGTACTTTCCAGGACTGCAAGTGGGCCTTCTCATCGTCCAGTAAGCTCAAGCGCCACCAGAAGAAGCACACGAATGAGCGCAAATTTGTGTGCGACGTGCCGGACTGTGGCAAGGCGTTTATGCGCTCGGAACATCTCAAGGAACACCGGCTGACGCACACGGAAGGTCGCCTCTTCGAGTGCTGTATGTGTGATGCCCGATTCTCCGCCAAGAGCAGTTTGTACGTGCATATTAAGAAGCATCAGCAGACCAAACCGGATTTGAACGTAGTCAATGATATGTCCGAAAGCACTCCCAATGATCAGAAACGCACGAGAAGAAGAGAATCTCATTACTCGCGAGTGAAGCCGATTAAGCCGAAGCGATGGAACACAGAACTGATGAACGCCGCGGAGACTATCGCGAAGGAAAACGACGTCGAGAAGCAGGGCGCCAGCGCGTGTTCCCAGGGTGAGGATCAAATGGAGTGGCTATACCATTGTCCGATAGATACATGCGGGCATTTGATCAGCAGCGAGACAAGTCTACGCGAGCACATGTTAAAAGCACACAGCATACATTGCGACGATTTGCTGACTAAGCCGTCTTCAGACAATGCCGACGTAGATTACGTTTTATATACCGTGCACAACTCACCTCCAAGTTCACCGACTGCCGTCGAAGAACAGATGGTTATGGTGACTCCGTGCGATGCCGTCATCCTCAACACCTCCTCGTCAAGAACGGATTGTTGTTTGCCGGAACCGGAGCCGCCACCTTTCAACACCTTGCTGAAAAGCTCGGAAACGTTCCGAAATGATGCGCGAACTGACAAGCGGGTCGTCGAAAAGGAAACTGTATCGGTGAAGGAGCAAGGCTCGGCAAGGACAGATCTAACATATTCCGACTGGTCTAAACTGAAGAAGAACAGTGCATTGATGAATTCGGTAGTAACGGAAACGTCAGACGTTGTACTGGGCGCGAGTGGTGATTTGAGCGAGGGTCTGTTGTTCACAGAAGAATTGCCGTCGATGTACTATCAGGACGATGTGGCAGGTACGGAATACCAGGTGCTGCTATTAGACTCAAGTCCGCTCGAGAGTGCTAGTAATTTGCGCGGTCTCGAGTGA
- Protein Sequence
- MSCRGAAVAACTSRRHSRERISSEGEEAECAPANGLFASSRTEEVGKKDRRTRKNECWHQTAPGKGVDVVETVADFEKWLKMRSTEPPVPSSIDLDAAKMVEGVDRYLGEEVLSHSCFLSKDPYGLSIDIDLADAKKLNLSSSYDPILQDLTHSENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALTPDDMMVAGEILPSANSQPTLSVESQDVVQNISKTEIPTQNNEIPCEKSTQVTLNQLPVNLVANEMEDARTEQETIAQSSASSSELFIEALPPMEESSTNTMANPMEVATQGMVIEQLKRTKLEPRIIKKRRQMMERLEKKLDKHINGKSFAVDADSQDGMMAVVAISTDKISNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAVWNGTVEYGTDNPSNPSSQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPREGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHSRPNRIVCQVPDCGEKFQTKRALEVHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRLFECCMCDARFSAKSSLYVHIKKHQQTKPDLNVVNDMSESTPNDQKRTRRRESHYSRVKPIKPKRWNTELMNAAETIAKENDVEKQGASACSQGEDQMEWLYHCPIDTCGHLISSETSLREHMLKAHSIHCDDLLTKPSSDNADVDYVLYTVHNSPPSSPTAVEEQMVMVTPCDAVILNTSSSRTDCCLPEPEPPPFNTLLKSSETFRNDARTDKRVVEKETVSVKEQGSARTDLTYSDWSKLKKNSALMNSVVTETSDVVLGASGDLSEGLLFTEELPSMYYQDDVAGTEYQVLLLDSSPLESASNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128451;
- 90% Identity
- iTF_01408503; iTF_01409425;
- 80% Identity
- -