Tnyl010209.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000087.1:415396-418152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00031 0.048 15.4 3.4 1 23 262 284 262 284 0.99 2 12 1.7 2.7e+02 3.6 6.3 1 23 289 311 289 311 0.97 3 12 4e-05 0.0062 18.2 1.1 2 23 321 342 320 342 0.97 4 12 1.4e-05 0.0022 19.6 4.6 1 23 434 456 434 456 0.98 5 12 0.00027 0.042 15.6 1.3 1 22 461 482 461 485 0.91 6 12 3.3e-06 0.00052 21.6 0.4 1 23 524 547 524 547 0.96 7 12 1.8e-05 0.0027 19.3 2.4 1 23 578 600 578 600 0.99 8 12 0.00021 0.033 15.9 4.0 1 23 614 636 614 636 0.96 9 12 0.0002 0.031 16.0 4.7 1 23 642 664 642 664 0.98 10 12 0.00035 0.055 15.2 3.1 1 23 670 692 670 692 0.98 11 12 6.1e-05 0.0095 17.6 6.5 1 23 698 720 698 720 0.98 12 12 0.00028 0.044 15.5 0.3 1 21 726 746 726 747 0.93
Sequence Information
- Coding Sequence
- ATGCAAATCGACAGCGGAATGTTGACGCGGACGAATCCGGACAGGAGCCTCTGCCGCGTCTGCCTGACCGTGGACCACAACAACCAGTGCATCTTCCGCAGGAACTGGGACGGTCCCGACGACTCCTCCTCTGGGCTGTCGGAGAAGCTGCAGTTATGCTGCGGCGTGGAGgTCCTGGAAGGCGACGGCCTGCCCACTAACATCTGCCTCGAGTGCGTGATGAAAGTCAACATCGCCTACGAATTGAGGAAACAATGTCAGAAAGCGGACGTTGAACTCAGGAAGCTGTACGGGAAAGCCTCGAGGACAGACGTCGCCGGCAACCGCATTCCTACAAAAGATCAATGTTGTCAAACTGAGCAATCTCTTATCTTGGGTGCAATCAATTCGGAGGATAATACAGAGCTAAGTGCGGACAGTGAAGTTAACATAGAGAAGAATACCTTGCAATCAAATGTCATGAGACAAGGACAAATACCGGACGCTTTCGAACAAATCAAGCAGGATGTTCTAGTAGACAGTGAAATGGATTTGGACTGCGGTAGTAGATATAAACAGGTAGAAGAATATGACAAAATAGCTAAAAAGGATCTTTATAGAACGAGAAGATTAATGTTTAAAAGGGTCACGTCTATAGAAAATTTGAAGAATTACAAGGAAAGACAGAGACGATATATCAAGAAGAGCGTGAACGTCAAACGCGAGAGCAGCGACGGCGAGTATCAGACGAAGGCGAGAAACGCCCACGGCAGGATGGAGAGAACGTCCGAGCTcgaattacaatataaatgtcAGAAATGTGATAGATTATATTCCAGTAAGAAGTCTTTAGATAGACACACGTCGACCCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTGGATAAATTACATAAGCACGTTAATCTGCACAGAACGAAGGAGAAGCCGAAGCCGGTGTCGTGCAAGATCTGCAACAAGAGTTTCAGAAAGATCGACACGATGGTCAGGCACCTGAATACTCACAAGAAGGCCTATCCCAAGGATGTTTTTTCCATCCTGAAAGAGATACGGGACAAGAGAAAGTTGGAAAATAATCCAGAGTCCTTTGAAACGCCACTTACGATGGACGAGGACGAAGAAACGCAGGCGCACGACGGTCAGTTACACAGTGAGAACGACGGCACGACGAGGGAGCTGAGAAAACGTAACAATGCAAGAGTGGAACAAAGAGACTCGGATATGATGAACAGCGACTCCAGCGATGATAAAACCGAGTCGTTCGACGACGCGTCGCTCTTCCGCTGCAAACACTGCAGCAAGAGTTATCGTACCGAGAGGTCGCTCCAACGTCATCTGCTGGTACACGACGAGAAGAAGTACGTCTGCAACGTCTGCAACATGAAGTTCTTCCGGCAGGACAGGCTCAAGAGCCACATGGATCGGTACGGTCACGACGAAACCAAGGCGTGCCCGGAGCCGCAAAAGCCGCCGGACGACAAGTCGGCCATCAAGCTGATAAACACCTGGATAAGAGAGGAGCTGGATTCCGATAACGAGGGCAAGGGCTTCCCGTGCGGAGTCTGCGGAAAGTCGTACGACACGAAGAAGTCCCTGATGAAGCATCAGATGAACGCGCACGGCGGACAGGACGAGGGCTGCGCGAGCTGCGGTACCGTGTGCAATTGCGCGTACAAGGATCAGGAGAAGAGCAACGAGAAGTCGAAGCCGTACACCTGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGCTGCACAGGCATCTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCCAACTTCAAGCGTTTCCTCTGCCACATATGCAGCAAGACGTTCCGCCAGAACACCGGCCTCATGTTCCACATGAGGACGCACACGGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGCTTCACCTCCAACTCGAACTGCATCAATCACGAGAGGACTCACACGGGCGACCGGCCGTTCGTCTGCCATTACTGTAGCGCCGCGTTCGCGAAATCGTGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAACTATCACTGCAAGACCTGCGGCAAGTCGTTCCGTCGACTCAAGTACTTGAAGGAGCACAGATTCACGCACACGGGCGAGAAGCCGTACGCGTGCAAGATCTGCGGCACCGCGTACAGCCATTCCGGCAGTCTGTTCGTTCACGAGAAGAAGTGCAAGGCCCAGTACAATAATTATCAGCCGGGGCTCCCGCAAAACGCGCAACAGCAGGTTCCCTACGGTCAGTCTCAGCAGACCACCGGCGGCGGCATTTCCATGGCGTCCACTTCTTCGGTAGTCGCTCCTATCATCGCTACGCTGCCTCAGGCTCACCTAAATGTCATCAACAGCACTCTGAATGTACAGGCGAACAAGGGCTACATGGACAATGTTCAGCGAATGAACGCGCACGCGGCGGCTAACGCGACCACGGTCGTCTCCGCGTCGGGTCTGCACCCGAATGTCGACATCGCCGAGATGAGTTCCGCCGTGAGGAACTTCTCTATCATCGGCCAGATGTTTCACACTTAG
- Protein Sequence
- MQIDSGMLTRTNPDRSLCRVCLTVDHNNQCIFRRNWDGPDDSSSGLSEKLQLCCGVEVLEGDGLPTNICLECVMKVNIAYELRKQCQKADVELRKLYGKASRTDVAGNRIPTKDQCCQTEQSLILGAINSEDNTELSADSEVNIEKNTLQSNVMRQGQIPDAFEQIKQDVLVDSEMDLDCGSRYKQVEEYDKIAKKDLYRTRRLMFKRVTSIENLKNYKERQRRYIKKSVNVKRESSDGEYQTKARNAHGRMERTSELELQYKCQKCDRLYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLHKHVNLHRTKEKPKPVSCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRKLENNPESFETPLTMDEDEETQAHDGQLHSENDGTTRELRKRNNARVEQRDSDMMNSDSSDDKTESFDDASLFRCKHCSKSYRTERSLQRHLLVHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKACPEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCGVCGKSYDTKKSLMKHQMNAHGGQDEGCASCGTVCNCAYKDQEKSNEKSKPYTCEECNKSFEKEIKLHRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQPGLPQNAQQQVPYGQSQQTTGGGISMASTSSVVAPIIATLPQAHLNVINSTLNVQANKGYMDNVQRMNAHAAANATTVVSASGLHPNVDIAEMSSAVRNFSIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765856;
- 90% Identity
- iTF_00765856;
- 80% Identity
- -