Tnyl002025.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000012.1:556819-560844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1e-06 0.00033 22.2 0.9 1 23 192 214 192 214 0.98 2 10 0.00031 0.048 15.4 2.4 2 23 222 243 221 243 0.97 3 10 0.0027 0.42 12.4 2.4 3 23 250 271 249 271 0.97 4 10 6.3e-05 0.0098 17.6 2.6 1 23 275 297 275 297 0.98 5 10 2.1e-06 0.00033 22.2 0.9 1 23 302 324 302 324 0.98 6 10 0.0019 0.3 12.9 4.2 1 23 331 353 331 353 0.98 7 10 0.00037 0.058 15.2 2.8 1 23 356 379 356 379 0.97 8 10 0.00017 0.027 16.2 1.9 1 23 383 405 383 405 0.98 9 10 1e-06 0.00016 23.2 1.0 1 23 410 432 410 432 0.99 10 10 1.4e-06 0.00023 22.7 7.1 1 23 438 460 438 460 0.98
Sequence Information
- Coding Sequence
- ATGAGATATTGCTGGAAAGTTAAAGGGATTatCCACAAGGACGATGCTCTGCCGCAGCAAATTTGTGCGAGTTGTGTCGACAAATTAGATTTTGTATGTGACTTTTACGACAGCTGTCATGTAATTCAGGAGAGATTATGGTGGCTTATTGAATCTTCGAAGAATCAACGCCAAGAGATACAGAAACAGCCCGCTGACTATCAAACGAATAAAGGAGACGATCCGACGCAGGAAGAAGTAACTTTGGGCACCGAATATTCGACAGAATATtctaacattattaataaaaaggaatgCCTGCCAGATTTAAATTTGGATATGTATCCTTCGAACCAAGAGACACAGGAACAGCCCGCTAGCTATCAAACGAATAAAGGAGACGATCCGATGCAGGAAGGAGTAACTTTGGGCACGGAATATTCGACAGAACATTcgaacattattattaaagaggAATGCCTGCCAGATTTAAATTTGGAATTGTATCCTTCGAACCAAGAGACACAGAAACAGCCCGCTAGCTATCAAACGAATAAAGGAGACAATCCGATGCAGAGTGACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCAAATGTGTACAAACGTAAAGAGAACTTGAATGAGCATCTGTTGAAGCACGAGGACATAAAAaagAACGTTCCTTGCGACACTTGCGGTAAGATTTTTCACTCGCACGTGAGGTTACGTGTACACATGCAGAGGCATAAAAGTAACAGTGTGGCATGTGAGATTTGCCGATATCACTTATCGAGTAAAGAAGCCTTGGAAAAACATCACAAAACAGTGCATTTACATGATTATGTCTGCGATATATGTCACAAGAAACTGAAATCTAAACATATGTTGAGCGCTCatataattAGTCACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCAAATGTGTACAAACGTAAAGAGAACTTGAATGAGCATCTGTTGAAGCACGAGGACATAAAAaagAACTTTCCTTGCGACACTTGCGGTAAGATTTTTTACTCGCACTTGAAGATGCGTGTACACATGCACAGGCATAAAAATTTCGCATGTGAGATTTGCCGACGTCACTTATCGAATAAAGAAGCTTTGGAGAAACATCACAAAACAGTGCATTTACATGATTATGTCTGCGATATATGTCACAAGAAACTGAAATCTAAACAGAAGTTGCGCGGTCATATAATTAGTCACTTAGAGAGCAAATTCAAGTGCCCGAAATGTCCGAATGTGTACAAAAGTAAATCGTCCTTGAATGAGCATATGTTGAAGCACGAGGGCATCCGTAAATATGAATGCTCTATCTGCAAAAAAACGTACTGTCAGCGATCGCACCTCACTCGTCATCAGAAAGTGCACTCTGAGCCTAGgtaa
- Protein Sequence
- MRYCWKVKGIIHKDDALPQQICASCVDKLDFVCDFYDSCHVIQERLWWLIESSKNQRQEIQKQPADYQTNKGDDPTQEEVTLGTEYSTEYSNIINKKECLPDLNLDMYPSNQETQEQPASYQTNKGDDPMQEGVTLGTEYSTEHSNIIIKEECLPDLNLELYPSNQETQKQPASYQTNKGDNPMQSDLESKFKCPKCPNVYKRKENLNEHLLKHEDIKKNVPCDTCGKIFHSHVRLRVHMQRHKSNSVACEICRYHLSSKEALEKHHKTVHLHDYVCDICHKKLKSKHMLSAHIISHLESKFKCPKCPNVYKRKENLNEHLLKHEDIKKNFPCDTCGKIFYSHLKMRVHMHRHKNFACEICRRHLSNKEALEKHHKTVHLHDYVCDICHKKLKSKQKLRGHIISHLESKFKCPKCPNVYKSKSSLNEHMLKHEGIRKYECSICKKTYCQRSHLTRHQKVHSEPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -