Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000149.1:289912-294044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.3e-07 9.8e-05 23.9 2.6 1 23 272 294 272 294 0.98

2 8 2e-05 0.0032 19.1 2.0 1 23 300 322 300 322 0.98

3 8 1.3e-06 0.0002 22.9 0.3 2 23 331 352 331 352 0.98

4 8 4.2e-05 0.0066 18.1 0.1 3 23 360 380 358 380 0.97

5 8 1.4e-07 2.2e-05 25.9 3.0 1 23 386 408 386 408 0.98

6 8 2.3e-06 0.00036 22.1 0.7 1 23 414 436 414 436 0.98

7 8 4.8e-05 0.0075 17.9 7.5 1 23 442 464 442 464 0.98

8 8 0.00027 0.042 15.6 1.4 1 21 470 490 470 491 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.3e-07	9.8e-05	23.9	2.6	1	23	272	294	272	294	0.98
2	8	2e-05	0.0032	19.1	2.0	1	23	300	322	300	322	0.98
3	8	1.3e-06	0.0002	22.9	0.3	2	23	331	352	331	352	0.98
4	8	4.2e-05	0.0066	18.1	0.1	3	23	360	380	358	380	0.97
5	8	1.4e-07	2.2e-05	25.9	3.0	1	23	386	408	386	408	0.98
6	8	2.3e-06	0.00036	22.1	0.7	1	23	414	436	414	436	0.98
7	8	4.8e-05	0.0075	17.9	7.5	1	23	442	464	442	464	0.98
8	8	0.00027	0.042	15.6	1.4	1	21	470	490	470	491	0.94

Sequence Information

Coding Sequence: ATGCGTGCCAGATTTCGTGGACCGTCGTGCTGTCGCGACGACTGTCTGCTTACGCAAGCAACGGTTCCCGCAGCTTGCGCCGAGATTGGCGAAGATTTCAACTGGATAAGAACGCAGCGCGATCGCGCTCATGATTTTTCTTCACGCGTAGCGATAGAATTGACTACGTCTACCGGGACTCTGTCTAAAGAAATCCATAGGAAGTCTCTGGCTGCCGAACCAATTCGATCCACGGTAATATCAATGAGCCCGAAGAATATCGTTCATTCTCCGAAAAGCGCCCCGCGAAGTGACGGGCTTTGCTCTACGACTTTCGAAGTTCCTACCAATTGCGAGACGAGTTTTAACAATGACTCGAGATTATCGCGCGAGATAATTAGTGATCCGGAAACGAAAGTCCAAGAGATCTATCGATCGCCGATCCCATTCGCACCCTCCGATCAGATCGCGACGCCCGCGAACGAGGCGAGAAGCAACGAGCAACCCCTCTTTCAGAATGTCGGCAACGCGTCCACGCAGCCGTTATCCTCGAGCAACGACAGCGTTATCGCGAGTGCCGGCAAAAGTGGGGGATATCCGACACAGGTGGTTCCGCAGACGCCAACGAAACCCGAACTGTCCCATCCGATCAGCAGACTCTGCGACACGATCGAGGCTGACGAGAGGAAAGAGACGCCGAAGACGGAAGTGGCGAGCGCGGAGAAGAGTGGAGAAGAGAGGATCACGaggatttttattaatagcgacaataacaataacaacgAGACGATCGTAAGCACGGAGGCGGCGCAGCGCGGACGATCGACCGACGACCACAAGTGCGATCAGTGCGGAAAGACTTTCGTCACGAGAGCATCACTCAAGGTGCACAGCCGAACGCACTCCGGTGAAAAGCCGTTCCGTTGCGCCGACTGCGGCAAACAGTTTTCGCAGCTGCGCAATTACAAGTACCATCGCAGCGTGCATGAGGGCACGCGGGAGTTCGCCGCCACTTGTCCGGAATGCGGCAAGTACTTCAACGACCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGCTGTGCGGAATGTGGGAAGAGCTTCAATCAGCGTGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTGAAGCCGCACCAGTGCGATCAGTGCGGAAAGGCGTTCTCGCGGAAGATGCTGCTTAAGCAGCACCTGAGGACTCATTCCGGCGAGCGGCCGTATCAGTGCCAGGTCTGCCAGAAAGCGTTCGCCGACCGCTCCAACATGACCCTACACACTAGACTACATTCCGGTCTGAAACCCTACCAATGCACCTTGTGCTCCAAGGCTTTCACCAAGAAGCATCACCTCAAGACTCATCTCAACTACCACACCGGCACCAAGCCATACTCCTGCACTAATTGCGGCGGCAGGTTCTCGCAGAGCAGCAACATGAGGACCCACTTTAAAAAGTGCATCGTCAACAATACTGCCGGAATGACGGCAAAGTCCGGTGATGAAGCCGGTCCTGATCGCGCCGATGCCGAAAGCGGCATGGCGCCGCAGGTGGTCCTGACGCCGCCCAACTCTGATCAGGAGTCCAGTATTCTGACACCGATCTCAAAAAACGCTGTCGCCATAGAAAGCAACACATAG
Protein Sequence: MRARFRGPSCCRDDCLLTQATVPAACAEIGEDFNWIRTQRDRAHDFSSRVAIELTTSTGTLSKEIHRKSLAAEPIRSTVISMSPKNIVHSPKSAPRSDGLCSTTFEVPTNCETSFNNDSRLSREIISDPETKVQEIYRSPIPFAPSDQIATPANEARSNEQPLFQNVGNASTQPLSSSNDSVIASAGKSGGYPTQVVPQTPTKPELSHPISRLCDTIEADERKETPKTEVASAEKSGEERITRIFINSDNNNNNETIVSTEAAQRGRSTDDHKCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCTNCGGRFSQSSNMRTHFKKCIVNNTAGMTAKSGDEAGPDRADAESGMAPQVVLTPPNSDQESSILTPISKNAVAIESNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354791;
90% Identity: iTF_00129943;
80% Identity: -