Tnyl009353.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000075.1:523158-524978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2e-05 0.0031 19.1 1.2 1 23 79 101 79 101 0.98 2 13 0.0051 0.79 11.6 2.3 1 23 142 165 142 165 0.97 3 13 0.19 30 6.6 1.3 3 23 179 199 177 199 0.83 4 13 0.042 6.5 8.7 1.5 1 23 207 229 207 232 0.64 5 13 0.029 4.6 9.2 5.7 3 23 321 341 320 341 0.97 6 13 0.00029 0.045 15.5 1.5 1 23 350 373 350 373 0.97 7 13 0.048 7.5 8.5 4.1 1 23 388 411 388 411 0.96 8 13 1.6e-06 0.00025 22.6 1.2 1 23 417 440 417 440 0.96 9 13 0.017 2.6 10.0 0.8 3 23 447 468 445 468 0.94 10 13 0.00018 0.029 16.1 0.6 1 23 473 496 473 496 0.97 11 13 2.4e-08 3.7e-06 28.4 0.4 2 23 503 524 502 524 0.97 12 13 2e-06 0.00032 22.3 0.7 1 23 530 552 530 552 0.98 13 13 4.9e-07 7.7e-05 24.2 0.1 1 23 558 580 558 580 0.98
Sequence Information
- Coding Sequence
- ATGAGACTGTGGCAGCACGCTGATGCCGGTGGTAAACTGCGCTATTCGTTAATACCGATGTTAGACGACGTCGATAAAGCTGAGGAAGATGTAAAGGTACTTAAAGTACTACCGTCAACCGCTATTAAAGTTGAAGAGGCCGAAGCTCAACAGAGCAATCAGAGAATCAGCGGATGCAGCGTCGGTAGTTGCATGAACTCCTTGATGCGTTTGCGCAAGATAGTCATTGATGGTTATACTTGCgacaaatgtaatataaaatttcccATGCAGTCTATGCTGAATCGCCACAAAATAACGCACAATATGCATTTATGGCTTTATGGGAAACGCCTGAGAGAAAAGTATGTGCGATATTTAAAGATGAACATTCGAAGACAATCCAAACAGTTAAAGGTGCGAAAGCGTTTACAGAGAGCAAAGTATGTTTGTACATTTTGCGATTTCGATTGTAATAGATTGGCGACTTTGAATGCGCATGTAAAGAAAAAGCACAAGAAAAACACGGCCAAAACAAATCCGAAGAAGCTCAGGTGTATTATCTGCAGTTACGAGTGTTTGAGTGAAGCGAATCTGAGCAGGCACATGCGAAAGCACAAGAACAAGAATATGACGAGTTTTGCTTGCAACGTATGCGATTTTGAATGTAAAAGGGGCTTTACTCTGATGTCTCACTTGGAGGGTCATAAGAGATCTAAGAAAAATTCAGACGCGAGCTGTGCGGAAAAGAAACGTAGAATAACGAAGTGTAACTACACATCTCCGAAGAAGACAAGTCAATCGGATTGCTCGCACAGCCGCGGGACGCCTAAGAGGACTGCGTTAATCTCATACGAGGATTCCAACGTGGTAATTAAACAGGAAGTTTGTGTCGAGGAACGCAACGAGACATCGGCGATCGCCGCCCACGTCCCCAGTCAGAAAAAGCCCAGTCAGAAGAGGCCGGCCGTCGAGGAACACTGCGACCTCTGCGATTTCACGTGCGCGAAGAAGAGCACGCTGTACGCTCATAAACGCCGGCACAAGGTGGAGGATGTCAACGAGGTGTTCGCGTGCAACGAGTGCGGCTTCAAGACTGCCAAGAAGTCGTCGCTGTACTCTCACATCAAGCGGAAGCACAAAGAGTCACGGTCCTGCGATGGCAACGGGCAGCCGGAACTGTTCTGTTGTACCCAGTGCGACTATAAGAACAAGAACAAGTATGAGTTGAAGATACACATCGCGCGCAAGCACACGGACGACTTCAAATTCTCCTGCGAGACCTGCGGTAAGAAGTTTAAGGTCAAGGGCGATCTGACGAATCATATACGTTTCAGCCACCGGGAGCAGCCGGTGATCTGTGACGTTTGCGGCAAGACTTGTCTCAATAGCAACTCCTTGTACGTGCATCAGAAGTTTGCGCACTACAAGGCCAAATACGAGTGTCAGATATGCAAGAGGCGGATGGTCAGCCAGGAGAACCTCAATGAGCACATGCTCAAGCAGCACGAGCGCAGGGAGAACGTGGTGTGCGAGGAGTGCGGCAAGACGTTCTCGCGGAACAGCAGACTGAAGGTGCACATGAGGATCCACACCGGGGACAAACCGTACAGCTGTACCGTCTGCAGCAAGTCCTTCGCCCGCAGGACAGCTCTCAAGCAGCACCTGCTTATCCACACTGGCGTCAGGCCGTACGTGTGCGATATCTGTGGCAAGGCCTTCACTCAGAAGCCGGGTCTGATCAGTCATAGGAAGTCACATCCGGGTTCTCACCCGCCTCTGCCGCGCGTCCTCATCGATCATATCTTGAACGACGTTATGAACGGTTCACGTGGTGATTGA
- Protein Sequence
- MRLWQHADAGGKLRYSLIPMLDDVDKAEEDVKVLKVLPSTAIKVEEAEAQQSNQRISGCSVGSCMNSLMRLRKIVIDGYTCDKCNIKFPMQSMLNRHKITHNMHLWLYGKRLREKYVRYLKMNIRRQSKQLKVRKRLQRAKYVCTFCDFDCNRLATLNAHVKKKHKKNTAKTNPKKLRCIICSYECLSEANLSRHMRKHKNKNMTSFACNVCDFECKRGFTLMSHLEGHKRSKKNSDASCAEKKRRITKCNYTSPKKTSQSDCSHSRGTPKRTALISYEDSNVVIKQEVCVEERNETSAIAAHVPSQKKPSQKRPAVEEHCDLCDFTCAKKSTLYAHKRRHKVEDVNEVFACNECGFKTAKKSSLYSHIKRKHKESRSCDGNGQPELFCCTQCDYKNKNKYELKIHIARKHTDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVSQENLNEHMLKQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYSCTVCSKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNGSRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129188;
- 90% Identity
- iTF_01408474;
- 80% Identity
- -