Tnyl007821.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- lola
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000056.1:2805078-2813753[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0034 0.53 12.1 1.2 1 20 43 62 43 64 0.94 2 16 0.0018 0.28 13.0 3.4 1 23 72 94 72 94 0.98 3 16 0.002 0.32 12.8 6.7 2 20 109 127 109 128 0.94 4 16 0.0042 0.65 11.9 2.3 1 23 137 160 137 160 0.95 5 16 0.0029 0.46 12.3 0.2 1 20 217 236 217 237 0.93 6 16 0.036 5.7 8.9 1.0 1 21 265 285 265 286 0.94 7 16 2.4e-05 0.0038 18.9 0.9 2 21 325 344 324 345 0.95 8 16 0.003 0.47 12.3 2.6 1 23 353 376 353 376 0.95 9 16 0.00099 0.15 13.8 3.0 1 21 409 429 409 430 0.96 10 16 0.0012 0.19 13.5 0.7 1 23 438 461 438 461 0.95 11 16 0.00012 0.019 16.6 1.0 2 21 533 552 532 553 0.95 12 16 0.017 2.6 9.9 7.2 1 23 561 583 561 584 0.95 13 16 0.00024 0.038 15.7 2.0 1 21 634 654 634 655 0.96 14 16 2.2e-05 0.0034 19.0 1.3 1 20 663 682 663 684 0.95 15 16 0.00077 0.12 14.2 0.2 2 21 772 791 771 792 0.95 16 16 5.8e-07 9.1e-05 24.0 1.1 1 23 800 823 800 823 0.96
Sequence Information
- Coding Sequence
- ATGATGAAGATCAGTGCTACTTCCGGTATTAATAAAGTGCTCTTCGTGATTGCAGGTTACATGAAGATGAGCTATTACGTGACACAAACGGTGAAGGATCGACGGCGGTGTCGTGGCCAAGGTCGCTTCGCCTGCGACAACTGCGATCGTCGTTATCACCAGATGAAGAATCTCAGGAGGCACGTGACGAACGAGTGCGGCAAGCAGCCGATGCATCAGTGCTCCTTCTGTCCGTACAGAGCGACTTATAAGTCGTATCTTCAAGTGCACATGACAAAACACGCCAAGCACGTTGACCCGAAATACGTTGGGATATTCAAGAATACCTGCGTCACCTGCGGCAAAACTTACAAGCACAAACACCATCTGAAGCGGCATCACGATTTCGAGTGCGGGGTCGATCCGAAGTTCAAGTGCGCCTTCTGTCCGCACAGGACCAGATACAAGGACAGCCTGATGAAGCACATACTGGCGCGTCATCAGCATTTCTTGGAACAGAATTCGCAATATGGTGCGACGTACAGTCCGGCCAATTGGACGATACCCACCTTACCGTCGACGTCGCGAATCGCGATGTACACTAGACGTCTACGTTCGATGTCCTCGAACGAGGTCAGTATGATCGGCGGCGGATCAGGTCCCCGTAAGTATCTCTGCAACGATTGCAGCCGAACGTTCGCTTTGAAAGCCTCGTTGCTGCGGCACAAAGCGTTCGAGTGCAACAAGGGTCGGCAGCCGTACGAGCGACAATCCCAGGACGAATGCGACAGGTCGAGGAAGTCGAAGAAGAAGCACGTGTGCGTCAGGTGTAATCGCGTATACGCGTTTTTCACGTCGCTCTGGCGACATCAGAAATACGAGTGCGGCGTGGAGCCGAAATTCGTCTGCCCGATCTGGTTCGCGTACGGATTTCGGAAGCCGCAAGACGCAACGAACACGCCGTTGACACAGCTGTCACCGTTATCGCCGCTCATGTGCCCGCAATGCGGGCGAACGTACAAGATGAAGCGCAATCTGAAGACCCACATGAAATTCGAGTGCGGCGGCCAGAGAAACTTCATGTGTCACTTATGCCCGTCTAAATACACGCAGAATATCAGTCTGCGTCGTCATCTTTTACAGAGGCACAACCTCTACATGCCGCCGAAGTTCTCGGTCCCTAAACAGCTGCTGTTGGTCGCCACACGAGGCCTCGCAGACGAAACCCTCAAGAACAATGTGGTCTTCACTTGTCATCAGTGCGGCAGAACGTATCAAATAAGACACAATCTAGTGAAACACCTGAGATATGAATGCGGCGGGCAGAAGCACTTCGCGTGCTCGCTGTGTCCCTCTAGATACACCCAAAACGGCAAATTGCGACAGCACATGCTGAATACCCACAACATTATCGTGCCCCCGCGAAGGGGGCTCGAGTTTATGTTGGCGAACAATTGGCCGACTCGATTTAGCAACAGACGGGCGCGTTTTTACGAGAGCATCCATCCAGCAGAAAATCCCGCGGTCCACGGCCGAAAAGCTCACGCCGCGCCCACGAAGATCGCCCGAGTTAAAACGAGCGCGAGATGTCCCGGCAACGCTGAAGATCAAGCACTGCAGTGCTCCGCCTGCGGGAAGAAGTACTCGCTAAAGCACAACTTGGCAAGACACATGCGCTTCGAGTGCGGCGGTCAGCGTCGATTCTCCTGTCACCTGTGCCCGAACAAGTACACGCAGAACGTCAGTCTGCGTAGGCACTTGACGCATCATCACAACATTATGGAAGATGATGTCAAGGACAAAGAATTGGAAGAACCTGTGCCAAAAATGCATCCCAAAGATACGAGTGTCATCGAGTCGAAGATAGACTTAGACTTCAAACTCGCCGTGAAACTCGCGCCAGGTTTCTCGAGGTTCCTCTTCACCTGTCAGAAATGCCCAAAAGGCTACACGATGCTCTGCAATCTGCGCAGGCACATGAAGTGGGAATGCGGCGGGAAACGCTATTTCCCGTGCTACTACTGTAGCAAAAGATTCACCCAGAAAACAAGCCTGCAACGGCACTTGACGGGACCGATCGCTCGATCGATCGGACGAGATTCTACGAGCCGCGTGTTTTCGACGACCGCGCCAAACTCCTTTTCGTGCCCCTTTCTCGAGAAATCGAGAGGTGCCGAAACGTGGTCTAGCGGGCTAGCGCGGATCAGGTCTCGATCGTTAAGACTCGCGTCTGGCGATCTCGGTCAGCACAGTGTGGCCTGGACGACCGTTCAGCCGGGACCGGCACGAAAGTCGCGACACGCAAATTATTTGAGGGATGAGGATCTCGCCCTCAAATGCCCACGGTGTGGCCGGGGTTACAAGGTCAAGCCCAGCCTGTCGAAACATTTGAGGTACGAGTGCGGTGGCCGCAGGAACTTCAGGTGCGAGCTGTGCGGGCGCAGTTTCACGCAGAACGTCAGTCTGCGCCGTCACCTGATGCAGAGCCACAACTTTTATCAGCCGCCACAGAAGCAATGCACTCGGAAGATCGTCAAGTGA
- Protein Sequence
- MMKISATSGINKVLFVIAGYMKMSYYVTQTVKDRRRCRGQGRFACDNCDRRYHQMKNLRRHVTNECGKQPMHQCSFCPYRATYKSYLQVHMTKHAKHVDPKYVGIFKNTCVTCGKTYKHKHHLKRHHDFECGVDPKFKCAFCPHRTRYKDSLMKHILARHQHFLEQNSQYGATYSPANWTIPTLPSTSRIAMYTRRLRSMSSNEVSMIGGGSGPRKYLCNDCSRTFALKASLLRHKAFECNKGRQPYERQSQDECDRSRKSKKKHVCVRCNRVYAFFTSLWRHQKYECGVEPKFVCPIWFAYGFRKPQDATNTPLTQLSPLSPLMCPQCGRTYKMKRNLKTHMKFECGGQRNFMCHLCPSKYTQNISLRRHLLQRHNLYMPPKFSVPKQLLLVATRGLADETLKNNVVFTCHQCGRTYQIRHNLVKHLRYECGGQKHFACSLCPSRYTQNGKLRQHMLNTHNIIVPPRRGLEFMLANNWPTRFSNRRARFYESIHPAENPAVHGRKAHAAPTKIARVKTSARCPGNAEDQALQCSACGKKYSLKHNLARHMRFECGGQRRFSCHLCPNKYTQNVSLRRHLTHHHNIMEDDVKDKELEEPVPKMHPKDTSVIESKIDLDFKLAVKLAPGFSRFLFTCQKCPKGYTMLCNLRRHMKWECGGKRYFPCYYCSKRFTQKTSLQRHLTGPIARSIGRDSTSRVFSTTAPNSFSCPFLEKSRGAETWSSGLARIRSRSLRLASGDLGQHSVAWTTVQPGPARKSRHANYLRDEDLALKCPRCGRGYKVKPSLSKHLRYECGGRRNFRCELCGRSFTQNVSLRRHLMQSHNFYQPPQKQCTRKIVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -