Tnyl022942.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000352.1:108439-109097[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-08 9.2e-06 26.6 0.0 1 39 14 52 14 57 0.91 2 2 2.3e-09 1.8e-06 28.9 0.1 1 39 69 107 69 112 0.93
Sequence Information
- Coding Sequence
- atggcACGAAATTATAAGAAGACTGAAAACCAGAGCTGGTCTGAGGAAAGCATGGCTGCAGCAATCGAAGATGTTATGAAGAACAACATAAGCTACAAAGATGCTGCTGATAGCCATAAAGTTCCTCTATCTACTCTGCGCGATAGGATAAGGATCAaagctaaaaaaaaagGTATAAAAATGGGACGAAATTATAAGAGCTGGTCTGAGGAAAGCATGGCTGCAGCAATCGAAGATGTTATGAAGAACAACATAAGCTACAAAGATGCTGCTGATAGCCATAAAGTTCCTCTATCTACTCTGCACTATAGGATAAGGATCAAAGCTAAAAAGGAAGGTTGTAGTTGCATAAAAACTTTCTACttgaatttatga
- Protein Sequence
- MARNYKKTENQSWSEESMAAAIEDVMKNNISYKDAADSHKVPLSTLRDRIRIKAKKKGIKMGRNYKSWSEESMAAAIEDVMKNNISYKDAADSHKVPLSTLHYRIRIKAKKEGCSCIKTFYLNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01407155;
- 90% Identity
- iTF_01407155;
- 80% Identity
- -