Tnyl001663.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000010.1:189416-191208[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-09 2.9e-06 28.2 0.1 2 38 16 51 15 55 0.89 2 4 1.6e-07 0.00012 23.0 0.1 1 35 68 102 68 108 0.84 3 4 1.9e-08 1.5e-05 25.9 0.1 1 38 121 158 121 162 0.91 4 4 8.9 6.8e+03 -1.8 0.0 17 27 342 352 339 352 0.87
Sequence Information
- Coding Sequence
- atggtACGAATATATAAGAAGAAGATTGAAAAGCAGAGCTGGTCTGAGAAAAGCATGGCTGCAGCAATCGAAGATGCTAAGAAGGGAATAAGCCAGAGAGAAGCTGCTAAAACCCATAAGGTTCCTTTTTCTACTCTACAATATAGGATAAACAAAGCTAAAAGGGAAGGTCTGTTTCCTGCCCGGAAAAAGAAGAGCTGGACTGAGGAAAGCATGGCTGCAGCAATCGAAGATGTTATGAAGGGAATAAGCTGCAGAAAAGCTGCTGAAACCCATAAGgttgtttttaatattctaagaTATAGGATATACAAAGCTAAAAGGGATGGTCTGTTTCCTGCCCGGGAAAAGAAGAGCTGGACTGAGGAAAGCATGGCTGCAGCAATCAAAGATGTTATGAAGGGCATAACCTACAGAGAAGCTGCTGAAACCCATAAGGTTCCTCGAGCTACTTTGTTcagaaagataaagaaagcTGAAAGGGAAGACCTGTCTCCTTTAGAAGCTGCCTCGAAAAGGTTAGGCATACCAAACAAATCGTCAAAAGTACTAGCTCTGCGTAGAGGAAAGCAAGTAGGCTCTTTATCTTCCAGTGAAGAAGTTCTCGTTACTGCTGAGACATGTATGAATGCTGCTGGTGATTATATGCccaaaatgtttattttccctagaaaaaaaggaaacctTGTGTTGATGAATAATGCTTCTCGCGACTCATTTGCCGTCTATCACGAGAGTGGATTGATTCAGAAAGACAGTTTTATTACTTGGTTCAAGAAATTCATTGAGTTTTCTTGTCCCAAACCTGAAAAGCCGGTGCTTTTGCTTCTAGATGGACACGCTTCTCATACTAAAAGTGTAAAGTTTATCAAACTTGCACAAGAAAACAACGTCATCATCTTGTCCTTCCCTCCGCATTGCACACATTGGTTGCAGCCACTTGACGTATCATTCATACCTCCTTTGATGACATATTATGAAGAAGAGGTGCAAGAATGGCTAACTGATCACCCAGGACGACATGTAACAATATGTAAAGTGGCGAAACTATACGGAAAAGCTTTTTTCAGAGCAGCTGAAAGACAAACTGCTATAGATGGTTTTGAAAAATCGGGAATATACCCATTGAATAAAAACGTGTTGGCTGATCTTAATGCTCCATCAAAAACCACTGAAAAACCTATGCAGCAGGAAATCCAAGATGATGAGACCCAATCTGTGATAtctggaaataataaaatccaCCCGTCAACATCTGCAATGTCCTCGATTATCCCTTcccaagaagaaaaaaatattcagaagagaaacaagaaaaaaaaaactgccaTCCTGACTTCGTCTCCCTACAAAAAGCAGGAAATGGAGACTGCCACTCGGAAAAGGAAGTTAGAAATAGAAGCCCCTAAAgttgaaaaattcaataagaaaaaaaagcagAAAGACAGCTCATCCTCAGATTAG
- Protein Sequence
- MVRIYKKKIEKQSWSEKSMAAAIEDAKKGISQREAAKTHKVPFSTLQYRINKAKREGLFPARKKKSWTEESMAAAIEDVMKGISCRKAAETHKVVFNILRYRIYKAKRDGLFPAREKKSWTEESMAAAIKDVMKGITYREAAETHKVPRATLFRKIKKAEREDLSPLEAASKRLGIPNKSSKVLALRRGKQVGSLSSSEEVLVTAETCMNAAGDYMPKMFIFPRKKGNLVLMNNASRDSFAVYHESGLIQKDSFITWFKKFIEFSCPKPEKPVLLLLDGHASHTKSVKFIKLAQENNVIILSFPPHCTHWLQPLDVSFIPPLMTYYEEEVQEWLTDHPGRHVTICKVAKLYGKAFFRAAERQTAIDGFEKSGIYPLNKNVLADLNAPSKTTEKPMQQEIQDDETQSVISGNNKIHPSTSAMSSIIPSQEEKNIQKRNKKKKTAILTSSPYKKQEMETATRKRKLEIEAPKVEKFNKKKKQKDSSSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -