Tnyl010149.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000086.1:405505-405966[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-12 3.9e-09 37.4 0.1 3 38 10 45 8 49 0.92 2 2 2.4e-12 1.9e-09 38.4 0.0 1 39 65 104 65 109 0.91
Sequence Information
- Coding Sequence
- atgacTGAAAAACAGAGCTGGTCTACGGAAAACATGGCTGCAGCAATCGAAGATGTTAATAAGGGAATGACCTACAGAGAAGCTGCTAAAAACCATAAGGTTCCTTTTTCTACTCTACAATATAGGCATAAGGAAGCTGAAAAAAGAGGTCTGTCTCCTTTAGAAGCTGCCCAGAAAATGCAGCACCTCTGGTCTGAAGAAAACATGGCTGCAGCAATCAAAGATGTTATGAAGGGGAAAATGAACGACGGAAGAGCTGCTAAGTTCCATAACATTCCTCGATCTACTCTGGTAGATAGGATAAAGAAAGCTAAAAAGGAAAGTCTGTCTTCTTTAGAAGCTGCCCCAAAAAAGCAGGAAATGGAGACTGCCACTCGGAAAAGGAAGTTAGAAATAGAAGCCCCTAaagttgataaattaaataagaaaaaaaagcagAAAGACAGCTCATCCTCAGATTAG
- Protein Sequence
- MTEKQSWSTENMAAAIEDVNKGMTYREAAKNHKVPFSTLQYRHKEAEKRGLSPLEAAQKMQHLWSEENMAAAIKDVMKGKMNDGRAAKFHNIPRSTLVDRIKKAKKESLSSLEAAPKKQEMETATRKRKLEIEAPKVDKLNKKKKQKDSSSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -