Tnyl001661.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000010.1:172955-174805[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-09 3.7e-06 27.8 0.0 1 38 15 52 15 56 0.92 2 3 4.4e-09 3.4e-06 28.0 0.2 1 39 69 106 69 109 0.93 3 3 1.9e-09 1.4e-06 29.1 0.1 1 38 123 161 123 166 0.90
Sequence Information
- Coding Sequence
- atgatacgaaaatataagaagaagATTGAAAAGCAGAGCTGGTCTGAGGAAAGCATGGCTGCAGCACTCGAAGATGTTAAGAAGGGAATAAGCCAGAGAGAAGCTGCTAAAAACCATAAGGTTCCTTTTTTTACtctaaaatataagataaagaAAGCTAAAAGGGAAGGTCTGTCTCCTGTccagaaaaagaagaagtgCTGGTCTGAGGAAAACATGGCTGCAGCAATCGAAGATGCTAAGAAGGGAATAAGCTACAGAAGAGCTGCTAGAAACCATAAGGTTCCTTTTGCTACTCTACAATATAGGATAAACGAAGCTAAAAGGGAAGGTCTCTATCCTGCCCAGAAAAAGAAGAACTGCTGGTCTGAGGAAAACATGGCTGCAGCAATCGAAGATGTTAATAAGGGGAAAATGAGCATTGCACAAGCTGTTGCTTTTCATAAGGTTCCTACTATTACTTTGTacaataagataaaggaagcTGAAAGGAAAGGTCTTTCTCCTTTAGAAGCTGCCTCGAAAAGGTTAGGCAGTAAAATTTTCTCAGAGGCTCAGGAAGAGGAACTTGTGCAACACATATTgctgtttaaaaaaagtttatttggCCTCATTCCAACAGATATACAAAAACTCGCATTTGAATTTGCTGAAGAGAACAACATTCCACATATGTTCAACAAGGAAAAGGAAAGCGCAGGGAAAGGTTGGCTCCACGGTTTCCTCGGCAGGCATGAGCAATTATCGCAAAAGAATTTTGAAGAAACTTTTCCTGCAAGCGCGAAGGGCTCTAACCGTACAGCAGTTCAATcattttttgatttattaaagtCTGTTTATAAAGAATACCACTTTTCAcgtaataacatttatattgtcAATGAAACGGGCATTATAATAGTACCAAAGAAATCGTCAAAAGTACTAGCTCTGCGTAGAGGAAAGCAAGACTCTTTATCTCCCAGTGAAGAAGTTCTCGTTACTGCTGAGACATGTATGAATGCTGCTGGTGATTATATGCCCACAATGTTTATTTTCCCTAGGAAAAAAGGAAACCTTGTGTTGATGAATAATGCTCCTCGCGGCTCATTTGCCGTCTATCACGAGAGTGGATTGATTCAGAAAGACAGTTTTATTACTTGGTTCAAGAAATTCATTCACTTTTCTTGTCCCCAACCTGAAAAGCCGGTGCTTTTGCTTCTAGATGGACACGCTTCTCATACCAAAAGTGTGAAGTTTATCAAACTTGCACAAGAAAACAACGTCATCATCTTGTCCTTCCCTCCGCATTGCACACATTGGTTGCAGCCACTTGACGTATCATTCATACcttctttgataaaatattatgaagaAGAGGTGCAAGAATGGCTAACTGATCACAGGACCCCAGGACCAGGACGACATGTAACAATATGTAAAGTGGCGAAACTATACGGAAAAGCTTTTTCTAGAGCAGCTGAAAAACAAACTGCTATAGATGGTTTTGAAAAATCGGGAATATACCCATTGAATAAAAACGTGTTGGCTGATCTTAATGCTCCATCAAAAATCACTGAAAAACCTATGCAGCAGGAAATCCAAGATGATGAGACCCAATCTGTGATAtctggaaataataaaatccaCTCGTCAACATCTGCAATGTCCTCGACTATCCCTTcccaagaagaaaaaaatattcagaagagaaacaagaaaaaagaaaaaactgcCATCCTGACTTCGTCTCCCTACAAAAAGCAGGAAATGAAGACTGCCACTCGGAAAAGGAAGTTAGAAATAGAAGCCCCtaaagttgaaaaattaaataagaaaaaaaagcagAAAGGCAGCTCATCCTCAGATTAG
- Protein Sequence
- MIRKYKKKIEKQSWSEESMAAALEDVKKGISQREAAKNHKVPFFTLKYKIKKAKREGLSPVQKKKKCWSEENMAAAIEDAKKGISYRRAARNHKVPFATLQYRINEAKREGLYPAQKKKNCWSEENMAAAIEDVNKGKMSIAQAVAFHKVPTITLYNKIKEAERKGLSPLEAASKRLGSKIFSEAQEEELVQHILLFKKSLFGLIPTDIQKLAFEFAEENNIPHMFNKEKESAGKGWLHGFLGRHEQLSQKNFEETFPASAKGSNRTAVQSFFDLLKSVYKEYHFSRNNIYIVNETGIIIVPKKSSKVLALRRGKQDSLSPSEEVLVTAETCMNAAGDYMPTMFIFPRKKGNLVLMNNAPRGSFAVYHESGLIQKDSFITWFKKFIHFSCPQPEKPVLLLLDGHASHTKSVKFIKLAQENNVIILSFPPHCTHWLQPLDVSFIPSLIKYYEEEVQEWLTDHRTPGPGRHVTICKVAKLYGKAFSRAAEKQTAIDGFEKSGIYPLNKNVLADLNAPSKITEKPMQQEIQDDETQSVISGNNKIHSSTSAMSSTIPSQEEKNIQKRNKKKEKTAILTSSPYKKQEMKTATRKRKLEIEAPKVEKLNKKKKQKGSSSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -