Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000010.1:181851-183272[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.2e-06 0.00093 20.2 0.0 1 39 15 52 15 55 0.93

2 7 8.6e-12 6.6e-09 36.6 0.1 1 38 68 105 68 109 0.91

3 7 8.9e-12 6.9e-09 36.6 0.1 1 38 121 158 121 162 0.91

4 7 1.2e-07 9.5e-05 23.3 0.1 2 38 175 210 174 214 0.89

5 7 9.7e-10 7.4e-07 30.1 0.1 2 38 228 263 227 268 0.89

6 7 4.3e-10 3.3e-07 31.2 0.1 2 38 281 316 280 321 0.89

7 7 4.6e-07 0.00036 21.5 0.1 1 39 333 372 333 378 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.2e-06	0.00093	20.2	0.0	1	39	15	52	15	55	0.93
2	7	8.6e-12	6.6e-09	36.6	0.1	1	38	68	105	68	109	0.91
3	7	8.9e-12	6.9e-09	36.6	0.1	1	38	121	158	121	162	0.91
4	7	1.2e-07	9.5e-05	23.3	0.1	2	38	175	210	174	214	0.89
5	7	9.7e-10	7.4e-07	30.1	0.1	2	38	228	263	227	268	0.89
6	7	4.3e-10	3.3e-07	31.2	0.1	2	38	281	316	280	321	0.89
7	7	4.6e-07	0.00036	21.5	0.1	1	39	333	372	333	378	0.94

Sequence Information

Coding Sequence: atggtACGAAATTATAAGAAGAAGACTGAAGAGCAGAGCTGGTCTGAGGAAAGCATGGCTGCAGCAATCGAAGATGCTAAGAAGGGAATATGCCAGACAGAAGCTGCTAAAAACCATAAGGTTCCTCTTTCTACTCTAAGATATAGGATAAAGGAACCTAAAAGGGAAGGTCTGTCTCCTGCCCGGAAAAAGAAGAGCTGGACTGAGGAAAGCATGGCTGCAGCAATCGAAGATGTTAAGAAGGGAATAAGCCAGACAGAAGCTGCTAAAACCTATAAGGTTCCTTTTACTACTCTACAATATCGGATGAACAAAGCTAAAAAGGAAGGTCTGTTTCCTGCCCGGAAAAAGAAGAGCTGGACTGAGGAAAGCATGGCTGCAGCAATCGAAGATGTTAAGAAGGGAATAAGCCAGACAGAAGCTGCTAAAACCTATAAGGTTCCTTTTACTACTCTACAATATCGGATGAACAAAGCTAAAAGGGAAGGTCTGTCTCCTGcccggaaaaaaaagagctgGTCTAAGGAAAGCATGGCTGCAGCAATCAAAGATGTTAGGAAGGGAATAAGCTACACACAAGCTGCTGAAACCCATAAGGTTCCTTTTTATACTATAAAAAATAGGATAAATAAAGCTAAAAGGGAAGGTCTGTTTCCTGCCCAGAAAAAGAAGAGCTGGTCTAAGGAAAGCATGGCTGCAGCAATCAAAGATGTTAGGAAGGGAATAAGCTGCAGAAAAGCTGCTGAAACCCATAAGGTTCCTTTTTATACTCTAAAATATAGGATAAAGAAAGCTAAAAGGGAAGGTCTGTTTCCTGCCCAGAAAAAGAAGAGCTGGTCTAAGGAAAGCATGGCTGCAGCAATCAAAGATGTTAGGAAGGGAATAAGCTGCAAAAAAGCTGCTGAAACCCATAATGTTCCTTTTTATACTCTAAAATATAGGATAAAGAAAGCTAAAAGGGAAGGTCTGTCTCCTGCCCAGAAAAAGAAGAGCTGGACTGAGGAAAGCATGGCTGCAGCAATTGAAGATGGTAATAAGGGGAAAGTGAGAAAACTAAGAGCTGCTACTTTATATAAGGTTCCTCGAACTACTTTGCGCGCTAAGATAAAGAAAACTGAAAGGGAAGGTCTGTCTCGTTTAGAAGCTGCCCCGAAAAGGTTAGGCAGTAAAACTTTCTCAGATGCTCAAGAAGAGGATATTGTGCAACACATAttgctttttaaaaaaagtttatttggCCTCACTTCAACAGATATATGGAAACTCGCATTTGAATTTGCTGAAGAGAACATTCCACATATGTTCAAcaaggaaaaggaaagagcAGGAAAACGATGGCTCTACAGTTTCCTCAGCAGGCATAAGAAATTATcgcaaaagaattttgcagaaaaattcatcaattattttttgatttattag
Protein Sequence: MVRNYKKKTEEQSWSEESMAAAIEDAKKGICQTEAAKNHKVPLSTLRYRIKEPKREGLSPARKKKSWTEESMAAAIEDVKKGISQTEAAKTYKVPFTTLQYRMNKAKKEGLFPARKKKSWTEESMAAAIEDVKKGISQTEAAKTYKVPFTTLQYRMNKAKREGLSPARKKKSWSKESMAAAIKDVRKGISYTQAAETHKVPFYTIKNRINKAKREGLFPAQKKKSWSKESMAAAIKDVRKGISCRKAAETHKVPFYTLKYRIKKAKREGLFPAQKKKSWSKESMAAAIKDVRKGISCKKAAETHNVPFYTLKYRIKKAKREGLSPAQKKKSWTEESMAAAIEDGNKGKVRKLRAATLYKVPRTTLRAKIKKTEREGLSRLEAAPKRLGSKTFSDAQEEDIVQHILLFKKSLFGLTSTDIWKLAFEFAEENIPHMFNKEKERAGKRWLYSFLSRHKKLSQKNFAEKFINYFLIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -