Tlon005622.1
Basic Information
- Insect
- Temnothorax longispinosus
- Gene Symbol
- -
- Assembly
- GCA_004794745.1
- Location
- QBLH01001337.1:38439-67079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4 1.8e+02 2.4 3.0 1 23 1315 1337 1315 1337 0.94 2 13 0.05 3.9 7.7 0.6 1 23 1345 1368 1345 1368 0.94 3 13 0.0001 0.0079 16.2 2.2 1 23 1374 1398 1374 1398 0.93 4 13 0.013 1 9.5 0.2 1 23 1502 1525 1502 1525 0.90 5 13 0.00013 0.01 15.8 1.6 1 23 1531 1553 1531 1553 0.98 6 13 0.63 49 4.2 5.5 1 23 1559 1581 1559 1581 0.99 7 13 3.7e-05 0.0029 17.5 0.9 1 23 1586 1608 1586 1608 0.97 8 13 0.47 37 4.6 1.7 1 23 1621 1644 1621 1644 0.92 9 13 0.00014 0.011 15.7 2.4 1 23 1660 1683 1660 1683 0.96 10 13 0.0011 0.086 12.9 0.6 1 23 1692 1715 1692 1715 0.98 11 13 0.0061 0.48 10.6 0.7 1 23 1720 1743 1720 1743 0.94 12 13 0.0007 0.054 13.5 2.8 1 23 1773 1796 1773 1796 0.98 13 13 3.9 3e+02 1.7 0.1 2 10 1802 1810 1801 1822 0.83
Sequence Information
- Coding Sequence
- ATGGCTGAAGCCGCAGATACATATAATGATCACCGGGACGAATCACGAAATACCGATGACGGTGCCATACGACTGTCCGGCGAAGCGTCGATAATTCAGGCCAGCGCCCAGCCTACTAACGTCTCTAATTTCCTTGATATTCGCATCGAAGGGTCCTTCCGCTCGAGGAGCTTAAGGATGCCAGAAATACCTCCatttctaAACAGAGCCATGTCGACAGACGTGCGAGGAGTTATATTATCTGGAGTTGAATTGGCAAGTGTCAATAAGATCAATTCTCATCTAATCACCGATCTAGTATCGCCGGATAAAGACGTCGATggACTAAATACTATTAATGAAGGGCGAGTTGCAATCGGCGATATGTCTGGATTTTTACCATGCACTCCGAACGGCTGtatcgaattaattaagagGAGCGGCGTGGCTATTGCCGGTGCTCAAGCCGTCGTTTTAGGGAGGAGCAAGATTGTCGGCACTCCCGTTGCCGAACTATTAAAATGGCATAATGCTACTGTTACTGTCTGCCACTCGAAAACGAAGAATCTTTCTGATGTCgTGCGTCAAGCTGATATTTTAGTGGTTGGGATAGGCCAACCCGAATTAGTTAAGGGTGATTGGATTAAATCGGGTGCCGTTGTCATCGATTGCGGCATCAATCCTATACCAGATCCCACAAAGAAAAGTGGACAACGTTTAGTGGGTGACGTAGCGTACCAGGAAGCTGCTAAAGTAGCTTCGTACATTACACCGGTACCAGGCGGCGTTGGACCGATGACAGTAGCaatgttaatgaaaaatacCGTGATATCCGCGCAAAAGTCGGCGCAAAAGCTCCTCAACGTCCAATGGAAATTGCGAGCTCTTCAACTGAATCCTGTGAAACCTGTACCAAGCGACATCGATATCTCCAGGAGTCAGGAGCCGAAACCAATCTCTGTACTAGCCGAAGAAATCGGACTACTGCCGAACGAATTTAGTCCTTACGGCAGCACGAAGGCTAAGATCGGCCTCAGCGTGCTACAACGACTAAAGAATCAACAAAATGGAAAGTTCGTCGTGGTGGCGGGCATCACGCCAACGCCATTTGGCGAAGGAAAGAGCACGACTTCCGTCGGATTGGTGCAAGCACTAACGGCGCACAGAGGCAAAAATTCTGTCGTTACTCTCAGACAACCTAGCCAGGGGCCTACGTTCGGCGTTAAAGGAGGAGCTGCTGGAGGAGGATATTCACAGGTGATACCCATGGAAGAATTCAATCTTCATCTGACCGGGGACATTCATGCCGTTACCGCCGCGAATAATCTTATGGCGGCGCAAATTGATGCGCGATACTTCCATGAATCGACTCAAGGTGACAAAAACCTGTACGATCGGCTGGTACCGAGTATTAAGGGTGTCAGGAAGTTTTCGAAAATCCAGCTGAAACGATTACAAAAACTTGGCATCACGAAAACTGATCCGAACTCATTAACGGAAGAAGAGCAACGTCAATTTGCAAGACTTGACGTCGATCCGAACAATATTACATGGACGCGAGTGGTGGATATTAACGATCGCTTTTTGCGGAAAATCACCATCGGCCAGAGCCCAACCGAGAAAGGCAAGACAAGAGAAACCTCGTTCTGTATTTCCGTTGGGTCTGAAATAATGGCAATCCTAGCATTATCAACCAGTGTCGAGGATATGAAGAGACGGCTTGGTAATATCGTCGTCGGATTTAGCAAAAATGGCGAGCCTTTAACTGCTGAAGATTTTGGCATGACGGGAGCAATGGCGATTCTGCTGAAAGATGCTATAGAACCGACACTTATGCAATCATTGGAGGGTACACCGGTAATGGTACACGCTGGACCGTTCGCCAATATAGCCCACGGTTGTTCATCCATTATCGCGGACGCTATTGCTCTAAAATTGGTCGGACCGCAAGGTATTGTAATAACAGAAGCCGGATTCGGATCGGATATCGGGATGGAAAAGTTCTTCGACATCAAGTGTCGTACCTCCGAACATGTACCGAATGCTGTCGTACTTGTGGCGACTATTAGAGCATTGAAAATGCACGGTGGTGGGCCGCCTGTAACGACCGGGGCACCGTTGAAGAAAGAATACATCGAAGAAAATATCGAACTTGTTAGAAAAGGCCTGCCAAATCTGCAAAAACATATCAGCAATGGTCTGAAATATGGCGTGCCCGTAGTTGTTGCCATCAACTCTCATAGTACCGATACTCAAGCGGAGCTAGAGCTCGTTAGGCAAGCAGCGTTGGAAAGCGGTGCAATTAATGCGGTAATATGCACTCACTGGGCCGAAGGTGGGGCTGGTGCTATAGCTCTTGCGGATGCATTGATAGCCGCTACCGAAGAAAATAGTAATTTCAAATTGTTGTACGATCTCGAGGACagtattgaagaaaaaattaataaaatcgccAAAGAGATATACGGTGCTGGCCAAGTCGTTCTCGCGGAAAAgGTGcagaaaaaaatcgagaacTACAACAAGTTAGGATATGACAAACTCCCAATATGTATGGCAAAAACGTCAAATTCATTAACGGGAGATCCAGCTATAAAAGGTGCACCAACTGGTTTCACCCTCCACATTACGGATATATTCGTTTCAGTCGGCGCCGGATTTATTGTTCCTATGGTGGGAGAGATCATGATGATGCCCGGGCTTTCGACTAGACCTTGTATCTACGATATGGACTGGAATAGCGAAACAAATGAAATAGAAGGCCTAAGGTTTCATACAGAAATGGAAGATACGTGCCGTCTGTGTGGTATTAAACTTGATATCGAATATTCCAAGTATATCTTTGATAAGGCAACTAATTTGGCGCAGATAATAAATGAGACTTTACCAATCAAGgtCTCGCAAGATGATCATTCCAAGTCGAAACATATATGTTTAGACTGTTACAATAAAGTTATCAGTCATTATGAATTCGTTCAAAATGTATTGGCATGCTCGAAGGAAAGCAAGACAAAAATCAACTCTTTCTTCGAAGTCAATAGAAATGAGAAATTGGAAAATGTGGTAATTTCTAAACTGCAGCGCGATATGATATGCACCTGTCCGAATTGCAACAAAGATTTAATACTCTTGTTAAAGAACAATTCTGAAAATAGTAATTATgcatttgacattttattggCTGTTGTGGATCAAATAGAAAAAGTAGAATCAGTAGAAGAAAATAGTCAAATATTTGAAGACACAATGGAGTTTGTTAACGTCTCTACACAGAACTCAAGTACAGATAGTAAATTACGTGGATTGTCATTGAATCATAACATCGTCGAAGAGGATGTGACAAATGATAACAAGCAAGATATCAATGGGATACACAGAAGCTCGAAAAGTGATACTAGCCATACAAATCTTAACATTACATTGCAAAAAACTGATGTACCATGTGAACCGAGTAAAGGTACAAAGAGAAAGTATCAAGTAGGCGTTTCTACTGAAACATCTATTAATCCTACTAAGTTGCAAAAACTACAAGCAAGATTAGATGCAATAAAACAAGATGTCGATGAATTGAACGGTGATCACGACAGATTAAATGTAACTAGCTTGTTGACATTCCAGTCAGTAAACAATGACGTGGTATGTCTCAatgaagaaatagaaaatgaagAGGAAAATTGTACAGAATATACGATGAGAGGAAAGCACTTCGATGAGAGTCTTACTGAATCGgaaacattaaaaacaaaattagatcCAACGGAACAAGATGAATTGACCAGTGATTATGATAAGTCAAGTTTAGCTGGCTTGATAACATTCCAGCCAGAAAGCAATGACACGGAATGTTTCAGTTGTGATGCAGAAACTCAAGAAGATAGTACAACAGACGTGACGAAAACGGAAAGAGCATGCATCAACAAAGATGAGGCAAATGACATCGACGTTCCAAAAAGTCATCTAAAACACATGTGCAATTTGTGTGGAGTTCGTTATAATTCACAATTAAAGTACAAGTTTCACATGGACAGACACAagttcaacaaaataaataaatacgtttgtTTAATATGCTCCAAAGAAACTAAAAATGAAAACTTGTTGTGGGAGCACTATATCCACATGCACAAGAACCCAGAGCGGTACACTTGCTTAAACTGCAACAGGACATTCACGAACAAACCAAATTTGGACGAGCATCAGAGAAAATACAGACACGTTGGTTACAGACAATTGGTAGTAAATGTTGAAACGGATGAGGATAACAATCAGACGCAGAAGGTTACAAAACAGAAGCGAAAATGCACTGTCTGCAGAAAATTGATAAGAGATACAGATCCTAATGCTATTAACGATCCAGCAATGTGCGCCTCCTGCGAAGACGCCAGTGCATATGTGATGGTCGACGGGGAAGGGGCGAAAGTGATATCACAGCGACGGTATCACTGTCTAAAATGTCGCAAGCACTTTATGCGCCAGGACAGACTCGAGTTCCACGAGATGCGACATAACGAGAACAGGGACGAGTTTATCTGCAGCACGTGCGGTAAGGATTTCAGCGGGGAAAATGCTTTGTACGAGCATTATATCTTCGTGCATAAAGGGATTAGACCGCATGTTTGCGAGGTTTGCGGCAAGTCGTTTCAACTGAAGGCGCGACTGAAGGAACACCTTCGGAAACACACGGGTGAGAAGCCTTATCAATGTGAGAGGTGCGGCCTGCGCTGCATGACTACGCACGCACTGAAATTCCACATGAAGTCTCATGTCTCCACTCGCCACACTTGCGAGATATGTGGCAAAGCGTTCATCAAGAAGCAGAATTGGAATGAACATCTGGAGAAGCACTGGAAGAAAGATAAGAACATAGCACTCTCGCGAATATTCACGTGTCCCGTGTGCAGCTGCGAGTTACCGACCTTCCGCATGCTGAAGCATCACGTGATTGGAAGCCATCAACTCGACCGTCAAGACCCCTTAGTAATGAAACAAAAACCATTGTACGAATGTAACGAGTGTCAGGAGAAGTTCAAACATCAAATGTCGCTCAAGGCGCACAAGGAGAAGGTGCACGAGGGCAAAACTGTCCCTCGTGTATTTCAGTGCGATTTATGTAAAGCCGTATACAAAGTTAAACAGCTGCTAATAAATCACATTAAGAGCAAGCACGAGGAAAAACAGTACAAATGTGTGAAATGCGATAGAATATTCGCGGATATGAAAACCCTGTACAGTCACGTTTCACTATACCATAATACGAAACAGTTCATCCGCAACGTGAACTTCAAACGAAGGGATACCGGAGATGCTCAGCGCCGTGAAGACACGAACAATCAGCCTTACCAGTGCACAGATTGCAACAAATCGTTCGGTAGCTATACCAGTCGCTCAAACCATCGCAGGAAGATACACGGGGACAACCAAACTAAGTGTTTGGAATGCGGAAAGAAATATGGCGATCTGCAAATCAGAATTCACCTGAACGATCATCTCGGCGAACAATTGAGACAATGTAAATTAGAATCCACAAGTAATGCAGTTAACGAGACTCTCTTTCCCTACGTGCGACAGAGCCTGAAAGATTACATCGAGACGAAGTGGGAGGATGAGGAGTTCAAGCAGGACTACGAGAAGTTAAAGGAACAGGCGAAAAAAGACGAGGAAGATAAATTAGATGGCTTTGTAGCGATTACTGGCGATAAGcccgaagaagaaaaagattcgcttttgaaaaatattttgtggcAAATGGATAACGATCGTAAGACAGGTGCATTAAAGCAACTGCAAGGACATATGTGGCGGGAAGCGTATAAAACAGGCAAAGTTAAGGGACATGTTTATGAAGATGTTCCTAAAGCGTTTGAATCGTGGACaaaaaatggcaaaaaaatatacgtctACTCAAGTGGCAGTGTTGAGGCACAGAAGCTCCTTTTCGGACATTCTGTACATGGCGATTTGCTTAAGtATTTCAGTGGTTACTTTGACACAGAAGTAGGTGCAAAGCAAGAAAGTGAcagctataaaaatatactaagtAAAATCGGCGAGAAACCATCTGATGTTATTTTTCTCACTGATATTGTAAAAGAAGCCGCAGCTGCGAAGGAAGCAGGTTTATCAACAGTGATCGTAGTACGTGAGGGTAATTCTGCACTAACTGATGAAGAGAAAGTTAAATACACAACCATTAAGTCTTTCTCGGACTTGACATTTCAAACGTCTACAAAGCGGCAAAAGTTAGAAACAGCTGATGACAAAGTTGATGAAGGTACGGTTGACGAGCCAATGGACACTTCTGAAGATGTAGAGATGTCAGATGTCAACgataaaaaagttgaaaaaaacgATGCAAAAGAAGTAATTGAATCGATAGGAAAAGAAGGTGTAAAGGATCAACCATCAGAAGATACTTCAAATTCTTTAGGACAAGTGGAAGAAGCAAAAGATGTTTCAAATACTGAGCAGGAGATGACAGAATCTGATGCCAAACTTAAGGATAAAAATGAGGATACAGGTTCCTCTGAAAGTGCCAAATGCACCGTGAAAGATGACACAACACTAGCCACAAAAGACAATGATAAAGACACTGTAGCAGAGAAGActgaagaaaaattagataCAATCGCAACTGAAACTACTGCTGCTGCCGATGATTCTATGGATGTATCTGTACCAGAGTCTGTATCAAAGTCTGAGACCATTCTCGCGTCTTCTGAGAAAAAGGTCGAAGATTCTGTAGATATCGCAAAGGATGTACAAGCTGAAGGTGTTGATAAAATTCAAACGGTTGAAAGTGACGAGAAAGCAGATGGCAATAAGTCACAATCACAAACTTGTGACAAAAATATAGCGAACAAATCTGAAGAATGCTTGACAGTGAAAAAAGATGAAGTAAAAGAAGAATCAAAGATTACACCTGAAAgtgagaatattttatcaaagaacGAACAAGAAGTAACAAAAGTGGAAACGACTGATGTCACAGAAAATGGAGAGGCCATGGAAACAGCAGCGGAAAAAACTACGGTATCTATAACGGTAACAGAAGCGGAAGCAACAGTTACGGACGTAAGGAAAGAAACAACGCCATCAACTGAAGTATCTGCAGGAAAGAGTTTGGAAGTAACTGCAGAATCCGAAAAAGTCGATGAGAAAGTGGCCCAAGAAATGGAAACAAAGACGACTGATGCTGATAAACGCGAGAACGAAACTACGCAGCAGGAGACAATAAAAGAAGAGGAGACAGTGAAAGAAGAGAATGTAGTGGATACCAAGGACAAAAATACAGTGGATTCAGAAAAGCAAAAACTCAACGGAACCACACAGAACGGAAATACGGATGTGCCAGTGTTGGATGACAAGTTACATAGCAACGGACTGAATGAAGGGCCATCGAAGGAGGCGACGAATGAAGACGCGGCAGCGCAAAACGGTGAGCCTGAGAGTTTGTCAGAAAGTAGTGCGGAATccataaaagttaaaaaagtcGTCGATTCCGCCGTAGCCGACGGTGCCGGAGAACCCGACGTTGTTCCTCCTGTAGTTGTAGCGGCGACGTCTTAA
- Protein Sequence
- MAEAADTYNDHRDESRNTDDGAIRLSGEASIIQASAQPTNVSNFLDIRIEGSFRSRSLRMPEIPPFLNRAMSTDVRGVILSGVELASVNKINSHLITDLVSPDKDVDGLNTINEGRVAIGDMSGFLPCTPNGCIELIKRSGVAIAGAQAVVLGRSKIVGTPVAELLKWHNATVTVCHSKTKNLSDVVRQADILVVGIGQPELVKGDWIKSGAVVIDCGINPIPDPTKKSGQRLVGDVAYQEAAKVASYITPVPGGVGPMTVAMLMKNTVISAQKSAQKLLNVQWKLRALQLNPVKPVPSDIDISRSQEPKPISVLAEEIGLLPNEFSPYGSTKAKIGLSVLQRLKNQQNGKFVVVAGITPTPFGEGKSTTSVGLVQALTAHRGKNSVVTLRQPSQGPTFGVKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLMAAQIDARYFHESTQGDKNLYDRLVPSIKGVRKFSKIQLKRLQKLGITKTDPNSLTEEEQRQFARLDVDPNNITWTRVVDINDRFLRKITIGQSPTEKGKTRETSFCISVGSEIMAILALSTSVEDMKRRLGNIVVGFSKNGEPLTAEDFGMTGAMAILLKDAIEPTLMQSLEGTPVMVHAGPFANIAHGCSSIIADAIALKLVGPQGIVITEAGFGSDIGMEKFFDIKCRTSEHVPNAVVLVATIRALKMHGGGPPVTTGAPLKKEYIEENIELVRKGLPNLQKHISNGLKYGVPVVVAINSHSTDTQAELELVRQAALESGAINAVICTHWAEGGAGAIALADALIAATEENSNFKLLYDLEDSIEEKINKIAKEIYGAGQVVLAEKVQKKIENYNKLGYDKLPICMAKTSNSLTGDPAIKGAPTGFTLHITDIFVSVGAGFIVPMVGEIMMMPGLSTRPCIYDMDWNSETNEIEGLRFHTEMEDTCRLCGIKLDIEYSKYIFDKATNLAQIINETLPIKVSQDDHSKSKHICLDCYNKVISHYEFVQNVLACSKESKTKINSFFEVNRNEKLENVVISKLQRDMICTCPNCNKDLILLLKNNSENSNYAFDILLAVVDQIEKVESVEENSQIFEDTMEFVNVSTQNSSTDSKLRGLSLNHNIVEEDVTNDNKQDINGIHRSSKSDTSHTNLNITLQKTDVPCEPSKGTKRKYQVGVSTETSINPTKLQKLQARLDAIKQDVDELNGDHDRLNVTSLLTFQSVNNDVVCLNEEIENEEENCTEYTMRGKHFDESLTESETLKTKLDPTEQDELTSDYDKSSLAGLITFQPESNDTECFSCDAETQEDSTTDVTKTERACINKDEANDIDVPKSHLKHMCNLCGVRYNSQLKYKFHMDRHKFNKINKYVCLICSKETKNENLLWEHYIHMHKNPERYTCLNCNRTFTNKPNLDEHQRKYRHVGYRQLVVNVETDEDNNQTQKVTKQKRKCTVCRKLIRDTDPNAINDPAMCASCEDASAYVMVDGEGAKVISQRRYHCLKCRKHFMRQDRLEFHEMRHNENRDEFICSTCGKDFSGENALYEHYIFVHKGIRPHVCEVCGKSFQLKARLKEHLRKHTGEKPYQCERCGLRCMTTHALKFHMKSHVSTRHTCEICGKAFIKKQNWNEHLEKHWKKDKNIALSRIFTCPVCSCELPTFRMLKHHVIGSHQLDRQDPLVMKQKPLYECNECQEKFKHQMSLKAHKEKVHEGKTVPRVFQCDLCKAVYKVKQLLINHIKSKHEEKQYKCVKCDRIFADMKTLYSHVSLYHNTKQFIRNVNFKRRDTGDAQRREDTNNQPYQCTDCNKSFGSYTSRSNHRRKIHGDNQTKCLECGKKYGDLQIRIHLNDHLGEQLRQCKLESTSNAVNETLFPYVRQSLKDYIETKWEDEEFKQDYEKLKEQAKKDEEDKLDGFVAITGDKPEEEKDSLLKNILWQMDNDRKTGALKQLQGHMWREAYKTGKVKGHVYEDVPKAFESWTKNGKKIYVYSSGSVEAQKLLFGHSVHGDLLKYFSGYFDTEVGAKQESDSYKNILSKIGEKPSDVIFLTDIVKEAAAAKEAGLSTVIVVREGNSALTDEEKVKYTTIKSFSDLTFQTSTKRQKLETADDKVDEGTVDEPMDTSEDVEMSDVNDKKVEKNDAKEVIESIGKEGVKDQPSEDTSNSLGQVEEAKDVSNTEQEMTESDAKLKDKNEDTGSSESAKCTVKDDTTLATKDNDKDTVAEKTEEKLDTIATETTAAADDSMDVSVPESVSKSETILASSEKKVEDSVDIAKDVQAEGVDKIQTVESDEKADGNKSQSQTCDKNIANKSEECLTVKKDEVKEESKITPESENILSKNEQEVTKVETTDVTENGEAMETAAEKTTVSITVTEAEATVTDVRKETTPSTEVSAGKSLEVTAESEKVDEKVAQEMETKTTDADKRENETTQQETIKEEETVKEENVVDTKDKNTVDSEKQKLNGTTQNGNTDVPVLDDKLHSNGLNEGPSKEATNEDAAAQNGEPESLSESSAESIKVKKVVDSAVADGAGEPDVVPPVVVAATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -