Basic Information

Insect: Temnothorax longispinosus
Gene Symbol: -
Assembly: GCA_004794745.1
Location: QBLH01002402.1:90342-96342[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1 86 3.5 0.3 1 20 366 385 366 389 0.87

2 10 0.0059 0.46 10.6 4.8 1 23 396 418 396 418 0.97

3 10 0.0018 0.14 12.2 5.5 1 20 424 443 424 446 0.95

4 10 0.00019 0.015 15.3 5.6 1 23 452 474 452 474 0.97

5 10 1.1e-05 0.00085 19.2 3.0 1 23 480 502 480 502 0.97

6 10 5.9e-08 4.6e-06 26.3 0.9 1 23 513 535 513 535 0.98

7 10 1.5e-06 0.00012 21.9 1.7 1 23 541 563 541 563 0.98

8 10 0.097 7.6 6.8 0.1 7 23 575 591 569 591 0.85

9 10 7.5e-07 5.8e-05 22.9 0.6 1 23 597 619 597 619 0.96

10 10 1.9e-07 1.5e-05 24.8 0.4 1 23 625 647 625 647 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1	86	3.5	0.3	1	20	366	385	366	389	0.87
2	10	0.0059	0.46	10.6	4.8	1	23	396	418	396	418	0.97
3	10	0.0018	0.14	12.2	5.5	1	20	424	443	424	446	0.95
4	10	0.00019	0.015	15.3	5.6	1	23	452	474	452	474	0.97
5	10	1.1e-05	0.00085	19.2	3.0	1	23	480	502	480	502	0.97
6	10	5.9e-08	4.6e-06	26.3	0.9	1	23	513	535	513	535	0.98
7	10	1.5e-06	0.00012	21.9	1.7	1	23	541	563	541	563	0.98
8	10	0.097	7.6	6.8	0.1	7	23	575	591	569	591	0.85
9	10	7.5e-07	5.8e-05	22.9	0.6	1	23	597	619	597	619	0.96
10	10	1.9e-07	1.5e-05	24.8	0.4	1	23	625	647	625	647	0.99

Sequence Information

Coding Sequence: ATGTCGTGGCAAAGTGTGAGCTCGAGGAATGATTCCTGCATGAATAAGTGTCGCGCTTGCATGAAGGAAGGCGGCAAGATGTTTCCCATGTACGATGATAAAGTCATCAGCAAGATTAATCTACCGTACAAGCTCGCGCAGCTCACGTCCATTCAGaTTGATAGGTTTGATGGATTGCCCAATATGCTCTGCCCGAAGTGTGCCTACCGAactaatgttttatataacttcAGACTGGCAGTGCAAGAGTCAGACAAGAAACTTCGGATGATACGTGAAACGCAAATGTGCACTGTGAAGaaacaagAGTTGAGTGAAAAGAACGGAGATAGCAGTGTAAAAACAGATGGATCCTTGGAATTAAATACGTCAAGCAATATAAAGTCTATAAGCAGTGCTGATTTTgagtatataaatgttaaaatgacAGATGAGAAGTTCAAGGATGAAGAACAATATGAAATTGATGTATCTCAGTTGATTGAAATCAATGGCGGAGATAACAAGGAAAGTTCACAGATGAGTGatgtcttttataatattatacaagaaaCTAATGAGAGCCAGATGGATGTACAGTTAGTGAAAACTGAGTTACCTgaagaaatttcgaaaatgtttACAACGCAGAATGTCgcaataatgtatatatcaaAATCTGCGATTGACTCAGCGGAGAACACGTTGATACTCGATCCAGAACAAGAAGAAATCGAAAATAGTAGCGATATATTTATCCCCGAATTGGAAAACTTGACTGGACAGGAAAGCGAAGAAGCCTCAAGCAATGCGTGTATTTCCGATTCTGTGGAATCTGATACAACTACAAGGAATAAATGCGGCTATTGGGAACATCAAGAtacaacaacaataataagTATTAGTGAACAAGAACAACGTGATATATCTCCACAAAATGgagataaagaaacaaaactcAATAAGAGCAGTTCTAACATTGAACAATCCATAAAAGCAGAGGATAGCGATGGATCTGATTCTGACTACTTTGTCGATGGTAAAGACAATATATTAGGCAGTGTGAGCGATGCAATTATACGGATAAAGGAAGTGCAGCAAGAAAATGGGGTTGAATATCAATGCACATTGTGTCTGCAGAACTACGATCAactaacaaatatattactgCACACCGTCGATAATCATGTCCCTCTCAGTGGTCCATTCTTTTGCATGGTGTGTGAAAAGGACTGCAAAAGTCATCGGGAGCTGCGAGCGCACGTGAAAACACACACTGGCGAGTTTCCATACTCTtgctttctttgtaaaaaggCATACACCAAAAAGAGATATCTGAAGAGACATATGGCATGTCATCCCAACTTTTCACGGCACCGTTGCCTCAAGTGCGGTTGCCGCTTCAAGTCCAAATCAGAATTGGAAACTCATGCGACGACACATGAACATGTCACACCCTACGCTTGCAATCAGTGTACGCGTGTATTTAATCACAAAGGTAATTACAAACGGCATTTGATCAGCCATTTGGATCCTCAAGGCCTTCACTTACCCAAATATCCGTGCAATTATTGTGACAAACGCTTTCCCAACAATCGTACACTGCAAACGCATATACGGGTTCATACCGGTGAGAAACCATTCCAGTGTGACGTTTGTCATAAGGCATTCTCACAACGAGGCAACTTGTTGAACCATTCAAAGATACATTCGAACCCTCGCAGCTACACGTGCGAAGTCTGNGGTAAAAGCTTCAATCAGCGAGCCACATTACGAGATCATGCATTATTGCATACAGGTGAAAAGCCCCACGTATGTAATGTATGTGGGAAAGCGTTTACGGTGAGCGCAGCATTGAGGAGGCATATGTTCAATCACGCTGACGGCAAACCGTTCAAATGTGAGAATTGTGGCATGGGATTTGTCGGCAAATACGACTTACGACGACACATGCGAGTACATGAGGCTCGACCTAAGGAAAAGCGAAGAAGAAACGCAAAAACAgccaattttcttaaaaagaaatcagaGGAAAGTCATATTGCATTGGAAGAACCGAATATCGAAACTGTGTTCATAGaagtagaagaagaagaagaagaacttGTACCGCAAAACGTTACGCAGACAATGCCTCAAGTCGAATCAGAAAAGGAAAATGAGGATGCACTATTTAATCTTCAATCTTATAATTCAGTTTTATACAGTACAGCTGAGAGTAgatcgtaa
Protein Sequence: MSWQSVSSRNDSCMNKCRACMKEGGKMFPMYDDKVISKINLPYKLAQLTSIQIDRFDGLPNMLCPKCAYRTNVLYNFRLAVQESDKKLRMIRETQMCTVKKQELSEKNGDSSVKTDGSLELNTSSNIKSISSADFEYINVKMTDEKFKDEEQYEIDVSQLIEINGGDNKESSQMSDVFYNIIQETNESQMDVQLVKTELPEEISKMFTTQNVAIMYISKSAIDSAENTLILDPEQEEIENSSDIFIPELENLTGQESEEASSNACISDSVESDTTTRNKCGYWEHQDTTTIISISEQEQRDISPQNGDKETKLNKSSSNIEQSIKAEDSDGSDSDYFVDGKDNILGSVSDAIIRIKEVQQENGVEYQCTLCLQNYDQLTNILLHTVDNHVPLSGPFFCMVCEKDCKSHRELRAHVKTHTGEFPYSCFLCKKAYTKKRYLKRHMACHPNFSRHRCLKCGCRFKSKSELETHATTHEHVTPYACNQCTRVFNHKGNYKRHLISHLDPQGLHLPKYPCNYCDKRFPNNRTLQTHIRVHTGEKPFQCDVCHKAFSQRGNLLNHSKIHSNPRSYTCEVXGKSFNQRATLRDHALLHTGEKPHVCNVCGKAFTVSAALRRHMFNHADGKPFKCENCGMGFVGKYDLRRHMRVHEARPKEKRRRNAKTANFLKKKSEESHIALEEPNIETVFIEVEEEEEELVPQNVTQTMPQVESEKENEDALFNLQSYNSVLYSTAESRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01409408;
90% Identity: iTF_01409408;
80% Identity: -