Tlon006049.1
Basic Information
- Insect
- Temnothorax longispinosus
- Gene Symbol
- TXNDC15
- Assembly
- GCA_004794745.1
- Location
- QBLH01001993.1:53598-68411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.54 42 4.4 0.3 2 22 260 280 259 283 0.88 2 13 3.1 2.5e+02 2.0 0.3 1 12 457 468 457 477 0.88 3 13 0.021 1.6 8.9 1.9 1 20 588 607 588 609 0.95 4 13 6.6e-05 0.0052 16.7 0.1 2 23 614 635 614 635 0.97 5 13 0.0056 0.44 10.7 6.0 1 23 646 668 646 668 0.95 6 13 0.016 1.2 9.2 0.3 1 23 687 708 687 708 0.80 7 13 0.00025 0.02 14.9 0.1 2 23 714 735 713 735 0.95 8 13 4.6e-05 0.0036 17.2 4.8 1 23 794 816 794 816 0.99 9 13 2e-06 0.00015 21.5 3.7 1 23 822 844 822 844 0.96 10 13 0.001 0.082 13.0 3.9 3 23 852 872 850 872 0.97 11 13 1.4e-06 0.00011 22.0 0.8 1 23 878 900 878 900 0.98 12 13 2.9e-05 0.0023 17.9 0.2 1 23 904 926 904 926 0.99 13 13 0.00068 0.053 13.6 0.2 1 23 934 956 934 956 0.97
Sequence Information
- Coding Sequence
- ATGAACTTATTGAGAATAAGCTTCATAGGCTTCGTTATGCCTCTAATCTTagttaatatcGCAAACAGCGAAGAAGTCGTGGAAGTATTTACAATACAAACAGCATCTGAGGATGCTATCAATGAAGAAGAAAGTAAGCAGGTTCATACAGATGAAACGAATGAGTCTGCGAACGTAAATGCCGATGTTCCAGTAAATGTCACGGTCTCAACCAATACTACTAAAGTTAATTGCTCGTCGGAGAAGATCTACGGTCCTGTTGAGATTGTCAATGCGACTAGACTCATGGAGCTATTGATCTTGGAGCCTGGCCCCTCAAATCGTTCCAGAAACGACAAAGACGGTAAACAGTTACCAGGAACGTGCGTTCTAGTGTTATTCTATGCCCGATGGTGCGTATTCAGTAGCCAAGCTGCGCCGCATTTTAACGCTATACCTCGCTCGTTTCCCCACGTTAAAGCCGTAGCCATCGATGCTATAAAACACCAAAGtgtaagaAAATACATCGCTTTCAGCTTCAATGCTCAATACGGAATAGTTGGGGTGCCGACGCTGATGCTGGTTCACAACGGCAAGCCTGTCGCCAAATTCAACGACACGACCTATACCCTGGAGTCGTTCGCCAAGTTCGTGTCTCATCTGACGAACCTGCAGCCGAACGGCTCGCTGTACGTTACGTCGGCGGACTTTACGGGGCCGGTTTCGAGCACGCCCTCCAACGAGACGGACTATTGTCTGTCCCTCAAGTACCACTTGTTAAGCCTGACGGACAATCTCTATTGCCCCGGCTGTTCCCAGCGTTCCGACTCCGTGACAGCGCTCATTCAGCACCTGGACATGTGCGAGCACGATCTCAGGTACAAGATGAAGCCTGAGATTCTGGCGGACAAGCTCAGGAAGGGCGGAAAGGAGCCCGAGATCAAAATGGATTTGCTAATGGATGTCAAGGCGCAGCAGATTAATCGGGGCTTCCTCGCGACGATGGGCAGCAACGGAGTTATCATAATGGGCGATCCGCAGACGATACAATTGGATGAGAATGAAAAGATGGACACGGATGGAACGCAACCAGATGAAAATTCTCTGGATTTCAAGATGTCCGAAGGACTCGCCGGCGACGGTGGCGGAGCGCAGAGAAGATTGCAGTCGTCACAAGGATTGATGACTATCCCCATATCGAATGCAGACCGCAAGACGGCGTCAATGGAGAAGAATGTGATCGCCGTGTTACCGGACAGTTCCGAGCTCCTGGATGGCGAGGCCGCTGCCCTGATCGATGTGGATCGTTTAAACGAGACAGGGGAGATCGACGAGGCTGGTTTTCTGCGTGTTAAGCGAGAGCTGTGCGAGCTCGAGTCTGACGCTGTATATAGTTGCACCAGTTGCGAAATGAGCTTCAACTCCGTCCTGGAGCATATCAAGCAGTTCCACGATGGCCAGGAGGTTTTGCTAGAGATGGCGGAGCAGTTGAATGATCTGGCGACGACAAGTCCGGTATCCGTGTTGTCCGAGGGCTCGGAAAATGTGGCGAACGCACGGCAGCGGCAGACGATGAACACGTTGCGCACGGAGGAATGTGTGGATAGCGAGGGTAGGCTCTACACCAGAAAAGTCGTGCAAATTGAGAAATTCTGGGACCGTACTCCGATTCAGGTGACAACGTCACAATCAGCGAAGGCTCCGATGATCGAGAAGTTCTTTTCGAATGTGGAAGGTGTTAAGGTACGAGAAAAACGCCTGGCGACCGCGTCGATGCGAATGTACAAATGCAATCAGTGCCTGCAGCAGTTCTCCAAGTTGGGAAATTTTCGCGTGCACGCCTGTCTCCGTGGCAATAATCGTTGCGAGCAATGCGATCAGAGCTTCGCGACCCCTAGAGCCTTGCAACTTCACGCGAAGGTGCACGACGGCGAAGCCGATCCGAACCGGAAGACGTTCCTTTGTACTACATGCGGTACCGAATTCTGCTCCCACAAAAGCTTACGACTGCATTCGAGGATGCACGCGCCAGTGAGAGCCAGACATGTCGATGCACCCGAGGGCACCCCTAACGCGACTTTCACGTGCCCCGAATGCgGTAAAACGCTATCCGAATCGTACAAAGACGCGCACATGACGCTTCACACGGGCGACTCAGTGACGTGTACCGTGTGCAACCGAAAGTTCGATTCCGCGGATAGCCTGACGATGCACGCGGCGGTGCACGTCGAACTGGCACCTCCGCAGTCGCCTATTATGCAGACTTTGATTTCGACGTCTTCCGAGGCAACGACGACACCAGCAACGATAACGCCGGCTTCGACGGTAACGTCAACAACGACGGTGACGACGGCGACAACGACAGTGACAACAATGGATCCAGGGGACAGCCAGAAACCCTATCAGTGCCAGCATTGTGGACGCAGGTTTACCAGACCGCACGAGAAAGTCAAGCATGAACGAATTCACACCGGGGAGAAGCCGCATGCCTGTGAGGTTTGCGGCAAGACCTTTCGCGTGTCCTACTGCCTGACCCTTCACATGCGCACGCACACGGGCGTACGACCCTACGGTTGTCAGCATTGTGGCAAACGCTTCAAGGCGTCCTCCGTCTACAATCATCACTTGCTGACGCACGGCGATGAGCGCGCCTACACGTGTCCGTACTGCCCGAAGACGTTCAAGACACGGGTGCAGCTGGCCGGTCACAAGAACAGCCACACGAAGCCGTTCCGCTGCACTGAGTGCTCACGGCCGTTCGCCTCGCTCTACGCTGTTCGCGCGCACATCCAGACCCACAAGAAGGACAATAATCTCAAGTTCAGCTGCTACGTGTGCGGCGCGTCGTATGGCCGGGCGTTCGCCCTCAAGGACCACCTGAAGCAGCACGGTCAGGACGTGCTGGCGCTACCGGAGCCAGCGCGGGAGGAAGAGGTACACGAAAACTTTCTCCTCGGCGAGGAGGAAGCTGAGGAAGACGAGTTCGTGGCCCCGCCACctccaccaccgccgccgccgtctccACCACCGCGCTTCTCCGGCGTGGACGACACCAACTGA
- Protein Sequence
- MNLLRISFIGFVMPLILVNIANSEEVVEVFTIQTASEDAINEEESKQVHTDETNESANVNADVPVNVTVSTNTTKVNCSSEKIYGPVEIVNATRLMELLILEPGPSNRSRNDKDGKQLPGTCVLVLFYARWCVFSSQAAPHFNAIPRSFPHVKAVAIDAIKHQSVRKYIAFSFNAQYGIVGVPTLMLVHNGKPVAKFNDTTYTLESFAKFVSHLTNLQPNGSLYVTSADFTGPVSSTPSNETDYCLSLKYHLLSLTDNLYCPGCSQRSDSVTALIQHLDMCEHDLRYKMKPEILADKLRKGGKEPEIKMDLLMDVKAQQINRGFLATMGSNGVIIMGDPQTIQLDENEKMDTDGTQPDENSLDFKMSEGLAGDGGGAQRRLQSSQGLMTIPISNADRKTASMEKNVIAVLPDSSELLDGEAAALIDVDRLNETGEIDEAGFLRVKRELCELESDAVYSCTSCEMSFNSVLEHIKQFHDGQEVLLEMAEQLNDLATTSPVSVLSEGSENVANARQRQTMNTLRTEECVDSEGRLYTRKVVQIEKFWDRTPIQVTTSQSAKAPMIEKFFSNVEGVKVREKRLATASMRMYKCNQCLQQFSKLGNFRVHACLRGNNRCEQCDQSFATPRALQLHAKVHDGEADPNRKTFLCTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMTLHTGDSVTCTVCNRKFDSADSLTMHAAVHVELAPPQSPIMQTLISTSSEATTTPATITPASTVTSTTTVTTATTTVTTMDPGDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDVLALPEPAREEEVHENFLLGEEEAEEDEFVAPPPPPPPPPSPPPRFSGVDDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -