Tlon004434.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax longispinosus
Gene Symbol
-
Assembly
GCA_004794745.1
Location
QBLH01002112.1:1245538-1252191[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0001 0.0079 16.1 1.7 1 23 558 580 558 580 0.97
2 12 3.2e-05 0.0025 17.7 1.3 1 23 584 606 584 606 0.99
3 12 0.00054 0.042 13.9 3.9 1 23 611 633 611 633 0.96
4 12 0.0001 0.0079 16.2 2.4 1 23 685 707 685 707 0.98
5 12 0.0008 0.063 13.3 1.4 1 23 712 734 712 734 0.97
6 12 0.0001 0.0079 16.2 2.2 1 23 783 805 783 805 0.98
7 12 0.00029 0.023 14.7 0.9 2 23 813 834 812 834 0.97
8 12 1e-06 7.8e-05 22.5 2.1 1 23 844 866 844 866 0.96
9 12 0.00023 0.018 15.0 1.6 1 23 872 894 872 894 0.97
10 12 0.00016 0.013 15.5 0.7 1 23 900 922 900 922 0.98
11 12 4.8e-06 0.00037 20.3 2.0 1 23 928 950 928 950 0.96
12 12 8.6e-05 0.0067 16.4 0.3 1 22 956 977 956 977 0.96

Sequence Information

Coding Sequence
ATGACTGGCTGCGTTGCAATTAATTGTAGTAATAGAAGCGAAAAAGGGTTTAAACTTTTTCGAATTCCAATAAATATGGAGCGACGAAAAAAGTGGCTTCAAAATCTAAATCTTCGCCGTGAACAGTGGATATCAAGCAAATCAGGTTGTGTCTGTGAAGTACACTTTGAGGATTCACAGTTCGAAAGTAGACGTGTCGACggttggaaaaaattaaagccAAATGCGGTTCCTACTTTATTTCATGTTCCATCTCGCAGGATTGATTCATCTCCAAGGAAGTCTCCATACAAAGTAAATAAGCTTGTTACTTCAGCGAAATgTTCAAATTGTTCAAATTATGATAAGTTATTGAGCGAAAATGAAAacttaaagaagaaaataaaaaaattaaaaatattacaagaaaaaaagctAAATTGGCAAGCAAGCGTATTTCATACTATTATACGTGACAAAGAAGCTGTGTTGAAGAGAAAATTGGAAAtagctaaaaataaaactaaaaccTTAAACAAAAATACGAAGCGAAAAGAGAACACTCTCACAAAGTTAAAGACATTATTGGAATTCTTaggaagcaaaaatatttcgaagaCTGCTGctgcatttaatttaagtGATGAATCAGATGATTTATCAGATgctctattaaaaaatataaaaagaaataaagctaaGTTTACATACAGTCAACATGATGAACATAATTACGCTTGTTCTGGAGagTTTCTTTATACTTATGAAGGAATGAATTGGCGTCTGTTTAATATAAGCTGTGAATGTTTTGTCCTCGGCAGAACAATGACTTCGGGTTACTTCACTCTACCGATTAATATGGACAGAGTGTGCAGGATCTGTCTCACCGAGGGCACCAATCTGTCGTCGATTTTCTCCTCTACTCAAGAAGTGAACGATCTCACGGATCTCTCTCAAAAAATCCAAGTCTGTGGCTCCATCGAGATACACGAGCAGGATGGATTACCTTCCCTGATATGCGACGTCTGTATTTATAAGGCCAGCGTCGCCCACGAGTTCAGGCAACAGTGTCAACACTCGGACGCGAGGTTGCGAATGTACTATAATAAGCCTGCCAAGATGAAATCTGCCACGgATTTTCAAGATTCTTGTACACAGACAGACCAAACGAGAttcatattttcgaaaaagcCAGACTTCCAGGAGGATTATTTTGCGAAGGACGACATGCAGGTGGTTGAGAGTGAGCAAGAGTACATTCAAACCACCGACTCGTTTCCCAGAAGCGAAGTCAGTCTGAATGCCAATCAAATTCAAATGCCATGCGAAAAACTGTTCATCTGTTCCATTGGATTTGAAAGTGCTAAAGAGGAGGGGAAGGATTCTTGCATATCGGAGACCGAGGTTCACCAAATGACGATAGCTCAGGAAGATGCGCAGGATACGTCTAACATCATCAGTTTGCAAAACAAGGATGACGACATGAAGGAGGCCGAACATGTAGATCAGGAGGAGCAGTTCGCCAATGAAAGCTTGTCCAATGATAATGTCGAAGAAGAGGAAAGCGTCCCGCAAAAACGTACGTCTGCGAGAAAGACGAAGTCGGCACCCGCTAAAACGTATAGCGACGACGAGATTGCTGACAATTATTACGAGCCGAGCAGCGACAGTCAAGATTCAGTGGAGTTGAAATTTAAGTGTAAGGTCTGCTCCAAGCAATACGCCACGCAGAAGGGTCTGAAGAAGCATTCGTTGGTCCACGAGAAGAAGTACAAATGTGATGTCTGCTTAAAGATGTTTTACAAACAGGAGAACATGGAAAACCATCAGAAGATTCATACGTCGAAGCCGCACGCGTGCCAGCTCTGTCACGCGTCCTTCTCAAAATCTCAGAGTCTCGTGAGACACTTGAAGTCACACACGGAGAAAGTGAACGATATGATTAAGCAGATCAATACGAGCGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGCTCAAGAGCGAGGACGATACCGACGATGAGACCGGGCCTTCAAACGAGGCAGACGAATTTGAGAACGCGCCCGAGTTGTACAAATGCGAGATTTGTAACCAATATTGTTCATCCTTGAAGAACCTAAGAAGACACGCCCTCGTGCACGGCGACAAGAAGTATTCTTGCACCGTGTgtaaaaaatggtttttcaGGCCGGACACGTTGAAAAAACACGCGGAGAAGCATGGGCACGGGCTGTTGGATAATTTGGTGGATGACAACAAGCTGTACGATTCGGACGACGACGATATGCCAGGCAACACGATGGATACCCCGCAAGAGAGCGAGAACGTCAAGAAGGAGGAGAGCGACGAGGAAGGATCCGGAGAGTACAAGTGCCAACACTGCGACAAGGTCATGGCTACTAAGAAAGGTCTGCGACGGCACGTGTCGATGCACAAGCCGAAGGCCGAGCCCGTCACCTGCGAGATCTGCAGGAAAGTCTGCGCTAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACGCACAAGCCAAAGGAGAAGGTGCCGCGCGAGTACCTGTGCCACATCTGCAGTAAGGTATACCCGAGCAACTCGTCCCTCACCTATCACATGCGAACTCATACCGGCATCAAGCCGCACGTATGCAAGACGTGCAACAGCGGCTTCACGACCACGACGAGCTTGGCGAATCACATTCGCATTCACACGGGCGACAAGCCGTTTGTCTGTCACGTGTGTAGCGCCGCGTTCGCTGTGAGCTCGGCTTTTCGCCGACACCTGACCCGGCACACCGGCGAGGCGAATTACCTGTGCAAAACCTGCGGCAAGGCCTTCAAGAGGCTCAGCACGTTGAAGGAGCACACGTACACTCATTCCGGTGAGAAACCATACGTATGCAAGACGTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTCTTCGCGCATCAGAAACGCTGCCGCGCCCAGTACGGCGAGATGATTGTCGACGATCACAATCATCATCACATACCGCACACTGTCACTCATATCCACGTGAATATGAATAATGTGAATAACGGGGCGGGAGTGCGACCGGTCGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence
MTGCVAINCSNRSEKGFKLFRIPINMERRKKWLQNLNLRREQWISSKSGCVCEVHFEDSQFESRRVDGWKKLKPNAVPTLFHVPSRRIDSSPRKSPYKVNKLVTSAKCSNCSNYDKLLSENENLKKKIKKLKILQEKKLNWQASVFHTIIRDKEAVLKRKLEIAKNKTKTLNKNTKRKENTLTKLKTLLEFLGSKNISKTAAAFNLSDESDDLSDALLKNIKRNKAKFTYSQHDEHNYACSGEFLYTYEGMNWRLFNISCECFVLGRTMTSGYFTLPINMDRVCRICLTEGTNLSSIFSSTQEVNDLTDLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKMKSATDFQDSCTQTDQTRFIFSKKPDFQEDYFAKDDMQVVESEQEYIQTTDSFPRSEVSLNANQIQMPCEKLFICSIGFESAKEEGKDSCISETEVHQMTIAQEDAQDTSNIISLQNKDDDMKEAEHVDQEEQFANESLSNDNVEEEESVPQKRTSARKTKSAPAKTYSDDEIADNYYEPSSDSQDSVELKFKCKVCSKQYATQKGLKKHSLVHEKKYKCDVCLKMFYKQENMENHQKIHTSKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKELKSEDDTDDETGPSNEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDDMPGNTMDTPQESENVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVTHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406563;
90% Identity
iTF_01406563;
80% Identity
iTF_01406563;