Tlon005115.1
Basic Information
- Insect
- Temnothorax longispinosus
- Gene Symbol
- lola
- Assembly
- GCA_004794745.1
- Location
- QBLH01001901.1:86999-212577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 0.004 0.31 11.1 0.2 1 20 48 67 48 68 0.93 2 43 0.05 3.9 7.7 1.0 1 21 96 116 96 117 0.94 3 43 0.017 1.3 9.1 0.1 1 16 125 140 125 142 0.93 4 43 3.4e-05 0.0026 17.7 0.9 2 21 168 187 167 188 0.95 5 43 0.0042 0.33 11.1 2.6 1 23 196 219 196 219 0.95 6 43 0.52 40 4.5 0.3 6 21 229 244 227 245 0.95 7 43 0.0017 0.13 12.3 0.7 1 23 253 276 253 276 0.95 8 43 0.00017 0.013 15.4 1.0 2 21 360 379 359 380 0.95 9 43 0.023 1.8 8.7 7.2 1 23 388 410 388 411 0.95 10 43 0.0011 0.083 12.9 0.2 2 21 516 535 515 536 0.95 11 43 0.0063 0.49 10.5 0.5 1 15 544 558 544 560 0.91 12 43 6.8e-05 0.0053 16.7 0.4 1 22 616 637 616 637 0.96 13 43 0.00048 0.037 14.0 3.1 2 21 650 669 649 673 0.91 14 43 0.023 1.8 8.7 7.1 1 23 678 701 678 701 0.97 15 43 0.0014 0.11 12.6 3.1 1 21 718 738 718 739 0.95 16 43 0.12 9.3 6.5 0.7 1 23 746 769 746 769 0.97 17 43 0.0021 0.17 12.0 0.7 1 21 781 801 781 802 0.96 18 43 0.71 55 4.1 2.9 1 17 810 826 810 827 0.92 19 43 0.00027 0.021 14.8 1.0 1 21 839 859 839 860 0.95 20 43 0.0016 0.12 12.4 2.7 1 22 868 889 868 889 0.95 21 43 0.5 39 4.5 2.1 1 21 918 938 918 939 0.92 22 43 0.00046 0.036 14.1 7.1 1 23 947 970 947 970 0.98 23 43 0.0071 0.55 10.4 0.7 1 21 993 1013 993 1014 0.94 24 43 0.015 1.2 9.3 5.2 1 20 1022 1041 1022 1041 0.97 25 43 0.0006 0.047 13.7 0.2 1 20 1134 1153 1134 1155 0.93 26 43 0.0016 0.13 12.4 6.7 1 22 1163 1184 1163 1188 0.94 27 43 7.5 5.9e+02 0.8 4.1 1 21 1200 1220 1200 1221 0.83 28 43 4e-05 0.0031 17.4 5.8 1 23 1251 1274 1251 1274 0.97 29 43 2.1e-05 0.0016 18.3 1.1 1 21 1276 1296 1276 1297 0.94 30 43 0.53 41 4.5 0.2 6 20 1310 1324 1309 1326 0.91 31 43 0.0014 0.11 12.6 2.8 1 21 1431 1452 1431 1453 0.95 32 43 0.0016 0.12 12.4 0.1 3 21 1462 1480 1461 1481 0.97 33 43 0.41 32 4.8 0.1 5 21 1481 1497 1480 1498 0.93 34 43 3.8e-05 0.003 17.5 1.0 1 20 1506 1525 1506 1527 0.92 35 43 0.023 1.8 8.8 0.2 1 21 1554 1574 1554 1575 0.96 36 43 0.044 3.4 7.8 2.3 1 23 1597 1619 1597 1619 0.95 37 43 0.007 0.54 10.4 0.4 1 22 1626 1647 1626 1647 0.94 38 43 0.039 3.1 8.0 0.3 2 22 1681 1701 1680 1701 0.93 39 43 0.0064 0.5 10.5 0.9 1 14 1709 1722 1709 1723 0.92 40 43 0.71 55 4.1 0.3 5 21 1723 1739 1721 1740 0.92 41 43 0.00037 0.029 14.4 2.3 1 21 1748 1768 1748 1769 0.94 42 43 0.0024 0.19 11.8 0.6 1 21 1802 1822 1802 1823 0.96 43 43 0.0004 0.031 14.3 0.1 2 20 1832 1850 1832 1851 0.95
Sequence Information
- Coding Sequence
- atggGTGCGACGTACAGTCCGGCCAATTGGACGATACCCACCTTACCGTCGACGTCGCGAATCGCGATGTACACTAGACGTCTACGTTCGATGTCCTCGAACGAGGTCAGTATGATCGGCGGCGGATCAGGTCCCCGTAAGTATCTCTGCAACGATTGCAGCCGGACGTTCGCTTTGAAAGCCTCGTTGCTGCGGCACAAAGCGTTCGAGTGCAACAAGGGTCGGCAGCCGTACGAGCGACAATCCCAGGACGAATGCGACAGGTCGAGGAAGTCGAAGAAGAAGCACGTGTGCGTCAGGTGTAATCGCGTATACGCATTTTTCACGTCGCTCTGGCGACATCAGAAATACGAGTGCGGCGTGGAGCCGAAATTCGTCTGCCCGATCTGTAAGGGCCGATTCGCCCAGAAGAGCAATCTGGATCGGTTCGCGTACGGATTTCGGAAGCCGCAAGACGCAACGAACACGCCGTTGACACAGGTGTCACCGTTATCGCCGCTCATGTGCCCGCAATGCGGGCGAACGTACAAGATGAAGCGCAATCTGAAGACCCACATGAAATTCGAGTGCGGCGGCCAGAGAAACTTCATGTGTCACTTATGCCCGTCTAAGTACACGCAGAATATCAGTCTGCGTCGTCATCTTTTACAGAGGCACAACCTCTACATGCCGCCGAAGTTCTCGTGCGGCAGAACGTATCAAATAAGGCACAATCTAGTGAAACACCTGAGATATGAATGCGGCGGGCAGAAGCACTTCGCGTGCTCGCTGTGTCCCTCTAGATACACCCAAAACGGCAAATTGCGACAGCACATGCTGAATACCCACAACATTATCGTGCCCCCGCGAAGGGGGTTCGAGTTTATGTTGGCGAACAATTGGCCGACTCGATTTAGCAACAGACGGGCGCGTTGCCCGAAAGAAGTTTATCACAGTTACGATGgtttTTACGAGAGCTTCCATCCTGCAGAAAATCCCGCGGTCCACGGCCGAAAAGCTCACGCCGCCGCGCCCACGAAGATCGCCCGAGTTAAAACGAGCCCGAGGTGTCCCGGCAACGCTGAAGATCAAGCACTGCAGTGCTCCGCCTGCGGGAAGAAATACTCGCTAAAGCACAACTTGGCAAGACACATGCGCTTCGAGTGCGGCGGTCAGCGTCGATTCTCCTGTCACCTGTGCCCGAACAAGTACACGCAGAACGTCAGTCTGCGTAGGCACTTGACGCATCATCACAACATTATGGTACCCGTGAAGAAGAGACATAACAGTTCTTATCGAATCGTCTATCCCAGGTTTCTCGAGGTCCCGCTTCACCTGTCAGAAATGCCGACGCGGCTACACGATGCTCTGCAATCTGCGCAGGCACATGAAGTGGGAATGCGGCGGGAAACGCTATTTCCCGTGCTACTACTGCAGAAAAAGTTTCACCCAGAAAACAAGCCTGCAACGGCACTTGACGGGAGTGTGGCCTGGACGACCGTTCAGCCGGGACCGGCACGAAAGTCGCGACACGCAAATTATTTGAGGGATGAGGATCTCGCCCTCAAATGCCCACGGTGTGGCCGGGGTTACAAGGTCAAGCCCAGCCTGTCGAAACATTTGAGGTACGAGTGCGGTGGCCGCAGGAACTTCAGGTGCGAGCTGTGCGGGCGCAGTTTCACGCAGAACTATTCGGTGTCACCCATGGCCCCGGTTGATCTCACGGTCAATCATGTTGATCACCAAGCTAATCATTCACACCCGGTTAACATCAACACCAACCATCCGCTGCAACTACCGATATCCTCTACGGATATGTCTATAACGCAAAATTCGTGCAACTGGAGTCCGCCTACCAGAAAAGGGTACATGTGCCCCGGTTGCGGCAAAGGTCTGTCCCACAAATACACTCTGGATCGCCATCTCAAGACCGTCTGTGGCAAGCCTCGCAACACCAACGGCAAGTGGAAGTGTAAGGACTGCAACAGGACGTACGAATCTCAGGGAAGCCTATCGCGTCATTACAGATTCGAATGCCATGTGAATCCCCAGTTTCGCTGCGTCTTCTGCAAGAGACTGTTCACCCAAAAATGCAGCCTGAGCAGGCATCTGAAGAAAAAGCACCAGAAAGATATAAACGTCTATGTTGAACTCGGTTCTTATCCAAGTCTCCACACGTGCTGCGAATGCCAGAAAACGTACAAGTCGCGGATGGCCCTGAACCGGCATGTGCGAGAGGAATGCGGCAGAATCTTGTATACCTGTCCGTACTGTCGCAACATCATGCCAATGAAGTTCAATCTATTGAATCACCTGAAGAAGGAGCACGCGATCTACCAGCAAAGCAACATCGTCCAAGTGTACCCGTGTGACACCTGCAACAGGCAATACCGCAGAATGATCTCCCTGCAACGTCACAAAAGGCTCGAGTGCGGCAAGGAGGCCAAGTTCGAATGTACGACGTGCCGTGCCAAGTTCAAGCACAAGCACAATTATTATCGCAGAGGCAACTCGGGTCCTTCCTCGTTCGCGAAGTACAACTGCGAGTTCTGCGGCAAGTTTTACAGGACTTGGGGTTCGTTCACGTATCATCGGAGAGTAGAGTGCAGGAAGGAACCTAGCTTCGCCTGCACCTTCTGCAACTACAGGTCTCATAGGAAAAGTAATCTGCTTAGGCACATGCAGACGCAGGAGAATACGCTGAGAATACGGCCGTTCACCGAGttgaaaatatcgaaagaTCGGAACTACGTCAACAAGCCGATCGGTCGTTTTGCCTGCTCTAGATGCGGCTGTTCGTACAAGTGGAAGAAATCACTGAAAAGCCACGAGAAATGGGATTGCGGCAAGGAGCCGCAGTTTAAATGTCCGTTTTGCCCGAAACGTTTCAAGCACAAATCGAACTGGCAGTGTCACATACGTCGCCAGCATAAGGATAAGGTGGATATAGAGGAGTACCTGCACTCCAACATGCCGAAACTAAAGTTGGTCGGTTGCTTTGCCTGCTCCAGATGCGGCCGTTCGTACAAGTGGAAGAAGTCGCTGCAACGCCATGAGCGATTGGAATGCGGCAAGGAGCGGCAGTTCAAATGTCCGTTTTGCCCGCAACGTTGTAAGCGCAAAGAACACTGGCAGCATCACATACCTACAGTAATCGACGATTCGGAAGATCGACGATCGGAATACGAGATGGACATGGAGACGAATCCTAGCGACTTTTTGGAAATAACCCCAATGGTAACCGAGGAAAATGAAGAGGAGTGCGATAGGGCGAAGGAGAACAGGAGTCTGAGCGACATAATAGAGGAGGAGAAATCCATGAATCTGTCAATGCAGACGCAGGAGAATGCGCTGATGCCGTTCgttaagttgaaaatattgaaagattgGAACTACGTCAACAAGCCGCACGTCGGTCGCTTTGCCTGCGCCAGATGCGGCCGTTCGTACGCGAGGAAGAACACGCTGCAACGCCACGAGCAATGGGAATGCGGCAAGGAGCCGCAATTTAAATGTCCGTTTTGCCCGCAACGTTGCAAGCGCAAAACGCACTGGCAGCGTCACATACGCCGCCAgcgtcgtcatcatcatcatcatgaTCAGGATAAAAACAAGCCCTTCAGTTGCAACCGCTGCGGCAGAAAATACAAATGGAAGACGTCTTTACATTGCCATCAAAGGGACGAATGCGGCAAGGAGCCGCAGTACAACTACGTTTGGAAGGTCTCTCTGACTCGACATATACGAGAAGAATGTGGTAAACCGCCGCAATTCAGATGCAAGTACTGTGGAAAGCTATTTAAGCAACGCAGCAGCTTTCAACGGCACTCGAAGAGGAAGCACCCGTTCCCTTGCCACAAGTGCGAAAGGAGCTACAAGAACAAGGGAAGTCTGAAACGCCATTTGGAAGTCGAGTGCAACAAGCCTCCGAAACACTATTGCATACCCTGCGCAAAGGGTTTTAAGCAGAAATGCAACTACCAACGTCACGCTGAAACCaaaatattcaatgatattcaaaagtcaaaatataatgtaagatACAAAttgatatgtaaatttaaattaccgATATATCTCAGCGTGAGCAGAGAGAAAGGCGTGCAAAAGATGGTAGCGAGAGTAAGATGTGGGAACGCAGgggaatgtaataaatattggcTGAATGAGGAGGCGAGAAAGTGTGTTTTCTGTAAGGAAAAATTAAGGAACCTGGAACATTTTCTAAAAGACTGTactaaatttgagaaatcaAACCTGGAAATCAGAGAAATAACGGATGGAACTTGTAAACCTGAAAGCTCCAAACCGTACCCCTGCCATAAGTGCAAAAAGAGAAGTTACACCAACAAGAGCACCTTAAACCGTCACCTGCGAGAGGAATGCGGCCAGCCGCCGAAATTGTGCCCCTACTGCGAGAAGCCGATTCATCAACAATCCAACTTCATACGTCACATACGTCAGTGCGGCAAGCGTTATACGTGGACGGATTCCTTGACGAGGCATCTACGCGAGGGATGCGGCGTCTTGCCGAAACACATTTGCACGGTTTGCGGCAGGAAATTCCGGCGCAAGGATTATCTGCTACGCCATGAGAACAACTCATTGGTCAGGCACAAACGGGAGGAATGCGGAAAAGATCCACAACCTCAAAATTATCATAGGCGGTATCGCGGCAAATACACCTGCGACGCATGCGGTAAGGAGTATACGTGGAAACCGTCTTTGACGAGGCATAAACGCGAGGATTGCGataACACCAGGTATAAGAAGGCTGGTGGTAGTAAACATCAGCGATACCGCGGCAAATATATCTGCAACGCATGTGGTAAAGAGTACAAATGGAGATATTCTCTGACGAGGCACAAACACCTACACTTGTACCCGTTTCGCTCTTATCCGTGCAACACGTGCGGCAAGACATACAAATGGAGAGAATCTTTGAGTCTGCACAAACGAATGGAGTGCGGTATCGAGCCACGCTTTACCTGTTGCGTCTGCGGCAGAAATCTACTTCCGGAAGGCGTGGCGTCTTCCTGGAAATCTAATCGGAAATCCTGGCCCTGCTACCGATGCGGCAAACGATACATGTGGCGGGACTCATTGAAGAAACACCAGCGGGTCGAATGCGGGAAAGATCCCACCTTCGAGTGTCCGATCTGCGGAAGGAAATTCAAGCACAAGCACCGATGCACCAAGAGTTATCAATTGGAAACGTCCTTGCGAAGACATCAGAGATTGGAGTGCGGCATTGAGCCCAAGCACGAATGCCTGATGTGTGGCAAGAAATTCACGTATAAATTCATGCTAACTCACCATTTGATGCTGCTGCAGGACGAAAGCGAGTGGAGCCCACGTGGAGCGAGTGGATCATCGTACAAGATGCCCAGAGACGCCCGAAAGAAGAGCCCGGGCGAGGCCAAGTACGTGTGCAACAGGTGCGGGAAAATGTACAAGGCTACGACTTCGTTAAGCCGTCACAAGCGACTTGAATGCGGTGTCGTGCCCTGCGAGGTATGCCCTATCTGCGGCCGCAGATTCAAGCACAGATTCGTCTTAAACGCCCACATCGTCGGCTGCGAGAGGAGAATGAATCAGACGATACAGAAGAAGGATTACGATTAA
- Protein Sequence
- MGATYSPANWTIPTLPSTSRIAMYTRRLRSMSSNEVSMIGGGSGPRKYLCNDCSRTFALKASLLRHKAFECNKGRQPYERQSQDECDRSRKSKKKHVCVRCNRVYAFFTSLWRHQKYECGVEPKFVCPICKGRFAQKSNLDRFAYGFRKPQDATNTPLTQVSPLSPLMCPQCGRTYKMKRNLKTHMKFECGGQRNFMCHLCPSKYTQNISLRRHLLQRHNLYMPPKFSCGRTYQIRHNLVKHLRYECGGQKHFACSLCPSRYTQNGKLRQHMLNTHNIIVPPRRGFEFMLANNWPTRFSNRRARCPKEVYHSYDGFYESFHPAENPAVHGRKAHAAAPTKIARVKTSPRCPGNAEDQALQCSACGKKYSLKHNLARHMRFECGGQRRFSCHLCPNKYTQNVSLRRHLTHHHNIMVPVKKRHNSSYRIVYPRFLEVPLHLSEMPTRLHDALQSAQAHEVGMRRETLFPVLLLQKKFHPENKPATALDGSVAWTTVQPGPARKSRHANYLRDEDLALKCPRCGRGYKVKPSLSKHLRYECGGRRNFRCELCGRSFTQNYSVSPMAPVDLTVNHVDHQANHSHPVNINTNHPLQLPISSTDMSITQNSCNWSPPTRKGYMCPGCGKGLSHKYTLDRHLKTVCGKPRNTNGKWKCKDCNRTYESQGSLSRHYRFECHVNPQFRCVFCKRLFTQKCSLSRHLKKKHQKDINVYVELGSYPSLHTCCECQKTYKSRMALNRHVREECGRILYTCPYCRNIMPMKFNLLNHLKKEHAIYQQSNIVQVYPCDTCNRQYRRMISLQRHKRLECGKEAKFECTTCRAKFKHKHNYYRRGNSGPSSFAKYNCEFCGKFYRTWGSFTYHRRVECRKEPSFACTFCNYRSHRKSNLLRHMQTQENTLRIRPFTELKISKDRNYVNKPIGRFACSRCGCSYKWKKSLKSHEKWDCGKEPQFKCPFCPKRFKHKSNWQCHIRRQHKDKVDIEEYLHSNMPKLKLVGCFACSRCGRSYKWKKSLQRHERLECGKERQFKCPFCPQRCKRKEHWQHHIPTVIDDSEDRRSEYEMDMETNPSDFLEITPMVTEENEEECDRAKENRSLSDIIEEEKSMNLSMQTQENALMPFVKLKILKDWNYVNKPHVGRFACARCGRSYARKNTLQRHEQWECGKEPQFKCPFCPQRCKRKTHWQRHIRRQRRHHHHHDQDKNKPFSCNRCGRKYKWKTSLHCHQRDECGKEPQYNYVWKVSLTRHIREECGKPPQFRCKYCGKLFKQRSSFQRHSKRKHPFPCHKCERSYKNKGSLKRHLEVECNKPPKHYCIPCAKGFKQKCNYQRHAETKIFNDIQKSKYNVRYKLICKFKLPIYLSVSREKGVQKMVARVRCGNAGECNKYWLNEEARKCVFCKEKLRNLEHFLKDCTKFEKSNLEIREITDGTCKPESSKPYPCHKCKKRSYTNKSTLNRHLREECGQPPKLCPYCEKPIHQQSNFIRHIRQCGKRYTWTDSLTRHLREGCGVLPKHICTVCGRKFRRKDYLLRHENNSLVRHKREECGKDPQPQNYHRRYRGKYTCDACGKEYTWKPSLTRHKREDCDNTRYKKAGGSKHQRYRGKYICNACGKEYKWRYSLTRHKHLHLYPFRSYPCNTCGKTYKWRESLSLHKRMECGIEPRFTCCVCGRNLLPEGVASSWKSNRKSWPCYRCGKRYMWRDSLKKHQRVECGKDPTFECPICGRKFKHKHRCTKSYQLETSLRRHQRLECGIEPKHECLMCGKKFTYKFMLTHHLMLLQDESEWSPRGASGSSYKMPRDARKKSPGEAKYVCNRCGKMYKATTSLSRHKRLECGVVPCEVCPICGRRFKHRFVLNAHIVGCERRMNQTIQKKDYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -